View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_196 (Length: 311)
Name: NF10481A_low_196
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_196 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 4 - 305
Target Start/End: Original strand, 7720553 - 7720867
Alignment:
| Q |
4 |
gagtttggtgttcgtcaagtggattgtaggaatctattaaactttaaatgtcgaaatt-------------gctgtttaaaaaatgtagttgctcacact |
90 |
Q |
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| T |
7720553 |
gagtttggtgttcgtcaagtggattgtaggaacctattaaactttaaatgtcaaaattctaatgttgatgagctcgttaaagaatgtagttgttcacact |
7720652 |
T |
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| Q |
91 |
ttagttaagatgactacatatatggttagtcttcttttatgagtttttctcttaataggctaaattttattgaaacatttagtccatatatagcacaagg |
190 |
Q |
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| T |
7720653 |
ttagttaagatgactacatatatggttagtcttcttttatgagtttttttcttaataggctaaattttattgaaacatttagtccatatatagcacaagg |
7720752 |
T |
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| Q |
191 |
ggtgatagtgaactaaggaaattacaagattactacaaagttcataagggaaacataaacatacaaacttaaacaactaaagacccctaacacatagata |
290 |
Q |
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| T |
7720753 |
ggtgatagtgaactaaggaaattacaagattactacaaagttcataagggaaacagaaacatacaaacttaaacaactaaagacccctaatacatagata |
7720852 |
T |
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| Q |
291 |
aaaacgtatagtagc |
305 |
Q |
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| T |
7720853 |
aaaacgtatagtagc |
7720867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 178
Target Start/End: Original strand, 20053863 - 20053899
Alignment:
| Q |
142 |
ttaataggctaaattttattgaaacatttagtccata |
178 |
Q |
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| T |
20053863 |
ttaatcggctaaattttattgaaacatttggtccata |
20053899 |
T |
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