View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_2 (Length: 671)
Name: NF10481A_low_2
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 50 - 665
Target Start/End: Original strand, 10856222 - 10856837
Alignment:
| Q |
50 |
gagaatcagtaaggagaatgtgaatataatggaattgagtcaatgaggaaagggggttagttttggagtgaaaattgggactggggagtgagagccattc |
149 |
Q |
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| T |
10856222 |
gagaatcagtaagaagaatgtgaatataatggaattgagtcaatgaggaaagggggttagttttggagtgaaaattgggactggggagtgagagccattc |
10856321 |
T |
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| Q |
150 |
tccactcagccagcatttcagtagcctttacatttttattgttgcaaggagaattctctccatccattgtattccctcttatgtaaataatatattccta |
249 |
Q |
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| T |
10856322 |
tccactcagccagcatttcagtagcctttacatttttattgttgcaaggagaattctctccatccattgtattccctcttatgcaaataatatattccta |
10856421 |
T |
|
| Q |
250 |
gaaggatctgcttctgtaccttctaaaatccttcgtattcactctttcatattcaattatcccttcagtttgatcctattaacttaaaatctttatttta |
349 |
Q |
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| T |
10856422 |
gaaggatctgcttctgtatcttctaaaatccttggtattcactctttcatattcaattatcccttcagtttgatcctattaacttaaaatctttatttta |
10856521 |
T |
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| Q |
350 |
atagaagagttagttctatgtaagttgtgtttgtctatactgtacatctaatatatataatttcctttatttgtttttcctcatgggcgatccagattcc |
449 |
Q |
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| T |
10856522 |
atagaagagttagttctatgtaagttgtgtttgtctatactgtacatctaatatatataatttcctttatttgtttttcctcatgggctatccagattcc |
10856621 |
T |
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| Q |
450 |
tagtatgaagcatttatcatttggtattggagacaccaaggttacatggaatccgaagtcttgtaaattagaatttgaaaaactgcaatgctttcaagaa |
549 |
Q |
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| T |
10856622 |
tagtatgaagcatttatcatttggtattggagacaccgaggttacatggaatccgaagtcttgtaaattacaatttgaaaaactggaatgctttcaacaa |
10856721 |
T |
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| Q |
550 |
gagtcagatagtgttctatatcggttccttggcatgttacccattataagaaagttggaattcagacatggtttacttgaagagttgttctctgctgaaa |
649 |
Q |
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| T |
10856722 |
gagtcagatagtgttctatatcggttccttggcatgttacccattataagaaagttggaattcagatatggtttacttgaagagttgttctctgctgaaa |
10856821 |
T |
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| Q |
650 |
gacctaatgctgatta |
665 |
Q |
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| T |
10856822 |
gacctaatgctgatta |
10856837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 521 - 665
Target Start/End: Original strand, 10888196 - 10888340
Alignment:
| Q |
521 |
aatttgaaaaactgcaatgctttcaagaagagtcagatagtgttctatatcggttccttggcatgttacccattataagaaagttggaattcagacatgg |
620 |
Q |
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| T |
10888196 |
aatttgacaaactgcaacactttcaagaagagtcagatagtgtgctgcatgtgttccttggcatgttacctgctataggaaagcttgaatttgataattg |
10888295 |
T |
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| Q |
621 |
tttacttgaagagttgttctctgctgaaagacctaatgctgatta |
665 |
Q |
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||| |||||||| | |||||| |||||||||||||||||||||| |
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| T |
10888296 |
tttggttgaagagatattctctcctgaaagacctaatgctgatta |
10888340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 10856169 - 10856208
Alignment:
| Q |
13 |
agatgaaatgtaactaattgtacaggtagcaggttgggag |
52 |
Q |
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| T |
10856169 |
agatgaaatgtaactaattgtacaggtagcagcttgggag |
10856208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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