View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_200 (Length: 306)
Name: NF10481A_low_200
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_200 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 7 - 306
Target Start/End: Complemental strand, 36951495 - 36951196
Alignment:
| Q |
7 |
acaaccatcaaaaacatcgccgttaaaccacttcataatcccccttccctctattttcccttttttccgatttccaatatagatacttccatcattccaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36951495 |
acaaccatcaaaaacatcgccgttaaaccacttcataatcccccttccatctattttcccttttttccaatttccaatatagatacttccatcattccaa |
36951396 |
T |
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| Q |
107 |
gtaaattttccgctgccttcgcgaattccttctttccataaaccttcgtaaatatctgaattggaatacacttttcgtccaatcccgtgatgagcattca |
206 |
Q |
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| T |
36951395 |
gtaaattttccgctgccttcgcgaattccttctttccataaaccttcgtaaatatctgaattggaatacgcttttcgtccaatcccgtgatgagcattca |
36951296 |
T |
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| Q |
207 |
tcctccatccacctgtgtaaacacagccgttcgattttgtgaatgtgccgtgaccatgaagataactcccggagaattcgccctcatactttgctcctga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36951295 |
tcctccatccacctgtgtaaacacagccgttcgattttgtgaatgtgccgtgaccatgaagataactcccggagaattcgccctcatactttgctcctga |
36951196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 89
Target Start/End: Original strand, 34539083 - 34539165
Alignment:
| Q |
7 |
acaaccatcaaaaacatcgccgttaaaccacttcataatcccccttccctctattttcccttttttccgatttccaatataga |
89 |
Q |
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|||||||| |||||||||||| ||| ||| ||||||||||| |||| ||| |||||| |||||||| ||||||| |||||| |
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| T |
34539083 |
acaaccattaaaaacatcgccattagcccaattcataatcccatttccatctcttttcctttttttccaatttccattataga |
34539165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 38453946 - 38454047
Alignment:
| Q |
7 |
acaaccatcaaaaacatcgccgttaaaccacttcataatcccccttccctctattttcccttttttccgatttccaatatagatacttccatcattccaa |
106 |
Q |
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|||||||||||||||||| || | | ||| ||||| |||| ||||| ||| |||| ||||||||| ||||||| | ||||||| |||||| |||||| |
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| T |
38453946 |
acaaccatcaaaaacatcaccatcaggccaactcatagtccctcttccatctcttttatcttttttccaatttccagtgtagatacctccatccttccaa |
38454045 |
T |
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| Q |
107 |
gt |
108 |
Q |
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|| |
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| T |
38454046 |
gt |
38454047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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