View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_204 (Length: 303)
Name: NF10481A_low_204
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_204 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 2 - 181
Target Start/End: Original strand, 36673540 - 36673719
Alignment:
| Q |
2 |
aggacattgtggtgtttaaactgcttccattgtataaacgcaacttttaccattagctgatcaaatttacctcttaacattttatatccttctggtttta |
101 |
Q |
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| T |
36673540 |
aggacattgtggtgtttaaactgcttccattgtataaacgcaacttttaccattagctgatcaaatttacctcttaacattttatatccttctggtttta |
36673639 |
T |
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| Q |
102 |
agttgggaagctcattttttccatgaggctaaagaacaagtggtaacaaaatccaaaattccaaattaagatttcttcag |
181 |
Q |
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| T |
36673640 |
agttgggaagctcattttttccatgaagctaaagaacaagtggtaacaaaatccaaaattccaaattaagatttcttcag |
36673719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 192 - 292
Target Start/End: Original strand, 36673758 - 36673858
Alignment:
| Q |
192 |
tccaaattaagatgtaatgtattccttcttaaatcaaacggttgtaaaagtatatactttattatgcaactttgttctcctaaataaaaacacatgcaac |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36673758 |
tccaaattaagatgtaatgtattccttcttaaatcaaacggttgtaaaagtatatactttattatgcaactttgttctcctaaataaaaacacatgcaac |
36673857 |
T |
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| Q |
292 |
a |
292 |
Q |
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| T |
36673858 |
a |
36673858 |
T |
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