View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_208 (Length: 298)
Name: NF10481A_low_208
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_208 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 298
Target Start/End: Complemental strand, 28337238 - 28336947
Alignment:
| Q |
7 |
gggctggtaggtgaaactacaaaagaaaagacggaagtgaagcgggcaaggtcaccggtatgtgcgtcccaaagacgcactggtccaccccaagaggctc |
106 |
Q |
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| T |
28337238 |
gggccggtaggtgcaactacaaaagaaaagacggaagtgaagccggcaaggtcaccggtatgtgcgtcccaaagacgcactggtccaccccaagaggctc |
28337139 |
T |
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| Q |
107 |
taccagcgctatttgggacgacatttgtgagatggatggacccgtttgaaatgaaggcgttgccttcgagttcaatgcttgttttgtatgggtcaaaatt |
206 |
Q |
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| T |
28337138 |
taccagcgctatttgggacgacatttgtgagatggatggacccgtttgaaatgaaggcgttgccttcgagttcaatgcttgttttgtatgggtcaaaatt |
28337039 |
T |
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| Q |
207 |
tgagactgtgaatgcagctgagtttacattctgagctgaaataaggaaggaaatgatggtaatgaaaaggatttgagtccttgaggtattga |
298 |
Q |
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| T |
28337038 |
tgagactgtgaatgcagctgagtttacattttgagctaaaataaggaaggaaatgatggtaatgaaaaggatttgagtccttgaagtattga |
28336947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 298
Target Start/End: Complemental strand, 28334009 - 28333726
Alignment:
| Q |
15 |
aggtgaaactacaaaagaaaagacggaagtgaagcgggcaaggtcaccggtatgtgcgtcccaaagacgcactggtccaccccaagaggctctaccagcg |
114 |
Q |
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| T |
28334009 |
aggtgcaacttcgaaagaaaagactgaagtgaaaccggcgaggttaccggtatctgcgtcccaaagacgcactggtccaccccaagaggctctaccagcg |
28333910 |
T |
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| Q |
115 |
ctatttgggacgacatttgtgagatggatggacccgtttgaaatgaaggcgttgccttcgagttcaatgcttgttttgtatgggtcaaaatttgagactg |
214 |
Q |
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| T |
28333909 |
ctgtttgggatgacatttgtgagatggatagacccgtctgaaatgaaggcgttgccttcgagttcaatgtttgttttgtatgggtcaaaatttgagactg |
28333810 |
T |
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| Q |
215 |
tgaatgcagctgagtttacattctgagctgaaataaggaaggaaatgatggtaatgaaaaggatttgagtccttgaggtattga |
298 |
Q |
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| T |
28333809 |
tgaatgcagctgagtttacattttgagctaaaataaggaaggaaatgatggtaatgaaaaggatttgagtccttgaggtattga |
28333726 |
T |
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