View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_212 (Length: 296)

Name: NF10481A_low_212
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_212
NF10481A_low_212
[»] chr6 (1 HSPs)
chr6 (8-296)||(12686478-12686768)


Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 296
Target Start/End: Original strand, 12686478 - 12686768
Alignment:
Q  8 tggtgttcgtatccatattcgtgtttcgtagtttgtaactctacgtggattgat-attgaaaaactatttcttgttgtactctcctaaaggttcaatctg 106  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  12686478 tggtgttcgtgtccatatccgtgtttcatagtttgtaactctacatggattgattattgaaaaactatttcttgttgtactctcctaaaggttcaatctg 12686577  T
Q  107 atcatcactctattctcttcacttttgatactaatgcacaaatttttccttcttcctttaaa-tttaaaagaaaaaagtggacttttcatgattattgta 205  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||     |||||||||||||||||||||||||||||    
T  12686578 atcatcactctattctcttcgcttttgatactaatgcacaaatttttccttcttcctttaaattttttttaaaaaaagtggacttttcatgattattgta 12686677  T
Q  206 aacatgtcatatattcaaagtttatttaatctgctaaactcaaagctttgaagcttattcctaagaaatggaacaaataaggttttggtga 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12686678 aacatgtcatatattcaaagtttatttaatctgctaaactcaaagctttgaagcttattcctaagaaatggaacaaataaggttttggtga 12686768  T

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