View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_218 (Length: 294)
Name: NF10481A_low_218
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_218 |
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Alignment Details
Target: chr6 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 30024914 - 30024625
Alignment:
| Q |
1 |
atgaatcaagtggtgggttgtaagagtgcttgttatgcttttaactcacctaagtattgttgcacgggtagttatggaagcccacaggcttgtaagccca |
100 |
Q |
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| T |
30024914 |
atgaatcaagtggtgggctgtaagagtgcttgttatgcttttaactcacctgagtattgttgcacgggtagttatggaagcccacaggcttgtaagccca |
30024815 |
T |
|
| Q |
101 |
ctagttattcgagaatctttaagttggcttgccctaaggcttactcttatgcctttgatgatcctacaagtattgttacttgttctatggctaattattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30024814 |
ctagttattcgagaatctttaagttggcttgccctaaggcttactcttatgcctttgatgatcctacaagtattgttacttgttctatggctaattattt |
30024715 |
T |
|
| Q |
201 |
ggtcactttctgtccttgaattgatcaaattagcatttagcttatagtttgttactttcaatgtttgttgtactaggttaatgaactact |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30024714 |
ggtcactttctgtccttgaattgatcaaattagcatttagcttatagtttgttactttcaatgtttgttgtactaggttaatgaactact |
30024625 |
T |
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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 182
Target Start/End: Complemental strand, 45273340 - 45273168
Alignment:
| Q |
10 |
gtggtgggttgtaagagtgcttgttatgcttttaactcacctaagtattgttgcacgggtagttatggaagcccacaggcttgtaagcccactagttatt |
109 |
Q |
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||||||||||||| ||||||||| |||||| ||||| |||| |||||| || || |||| | ||| | ||||||| | || ||||||||| ||||| |
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| T |
45273340 |
gtggtgggttgtagaagtgcttgtgctgctttcaactctcctaggtattgctgtactggtaactttggtaccccacagacctgcaagcccactgcttatt |
45273241 |
T |
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| Q |
110 |
cgagaatctttaagttggcttgccctaaggcttactcttatgcctttgatgatcctacaagtattgttacttg |
182 |
Q |
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| T |
45273240 |
caagaatcttcaaaactgcttgcccaaaggcttactcttatgcttatgatgaccctaccagtattgctacttg |
45273168 |
T |
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