View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_230 (Length: 289)
Name: NF10481A_low_230
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_230 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 2494 - 2239
Alignment:
| Q |
11 |
cagagatgaccaaataataataacaattattaaaatacacaataaaaccctannnnnnncttcattgttatgaaataataatacacaagaaagtgcatca |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2494 |
cagaaatgaccaaataataataacaattattaaaatacacaataaaaccctatttttttcttcattgttatgaaataataatacacaagaaaatgcatca |
2395 |
T |
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| Q |
111 |
ttataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2394 |
ttataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcag |
2295 |
T |
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| Q |
211 |
gtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggtagaaat |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2294 |
gtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggtagaaat |
2239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 11 - 266
Target Start/End: Complemental strand, 3451713 - 3451458
Alignment:
| Q |
11 |
cagagatgaccaaataataataacaattattaaaatacacaataaaaccctannnnnnncttcattgttatgaaataataatacacaagaaagtgcatca |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
3451713 |
cagaaatgaccaaataataataacaattattaaaatacacaataaaaccctatttttttcttcattgttatgaaataataatacacaagaaaatgcatca |
3451614 |
T |
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| Q |
111 |
ttataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451613 |
ttataaatagaaacaaagaaaaatggacctgaatgaagcaatcatgaaaaacaagacgaataagagcaggaaccaaagcaggattagttttgtaaagcag |
3451514 |
T |
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| Q |
211 |
gtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggtagaaat |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3451513 |
gtgaagcgtagaacgaacaatgtgctcagcatgaggacatgaatcacggtagaaat |
3451458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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