View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_233 (Length: 289)
Name: NF10481A_low_233
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_233 |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 22159538 - 22159769
Alignment:
| Q |
1 |
ggtcgagattaaattaatgcatcacacatcgaatgtgtgcaccgcaattcaaatcccattaacattgtttgcatgttcttctatgaatttcttagcaaga |
100 |
Q |
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| T |
22159538 |
ggtcaagattaaattaatgcatcacacatcgaatgtgtgcactgcaattcaaatcccattaacattgtttgcatgctgttctatgaatttcttagcaaga |
22159637 |
T |
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| Q |
101 |
acggctcttactagctcattttccctctcttacgactttaaggaaaatatctgttcatgtgacaatcacacaacttatgacac----attgatgaagcat |
196 |
Q |
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| T |
22159638 |
acggctcttactagctcattttccctctcttatgactttaaggaaaatatctgttcatgtgacaatcacacaacttgtgacacattgattgatgaagcat |
22159737 |
T |
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| Q |
197 |
atatttgtacccaagttgctttgatttggagt |
228 |
Q |
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| T |
22159738 |
atatttggaccgaagttgcattgatctggagt |
22159769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 228 - 283
Target Start/End: Original strand, 22159905 - 22159960
Alignment:
| Q |
228 |
tatgttcttattttgcagactttgctcactgtttttctttctttccggtgttcatg |
283 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22159905 |
tatgttcttattttgcagactttgctcactgtatttctttctttccggtgttcatg |
22159960 |
T |
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