View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_235 (Length: 289)
Name: NF10481A_low_235
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_235 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 37 - 289
Target Start/End: Complemental strand, 39441440 - 39441188
Alignment:
| Q |
37 |
cctggccaaagcacacggtgaaaaacttctttcggtttgtacaaggaaaaaataatagagcaatgctagatgcagtcgctctatcaatcacttttaggca |
136 |
Q |
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| T |
39441440 |
cctggccaaagcacacggtgaaaaacttctttcggtttgtacaaggaaaaaataatagagcaatgctagatgcagtcgctctatcaatcacttttaggca |
39441341 |
T |
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| Q |
137 |
cttcctcatggattggtccacgtcattaatcttaataaaatttaagaccggcaacctgctgctctattcaattattatattttaatagtaaaatgaaaag |
236 |
Q |
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| T |
39441340 |
cttcctcatggattggtccacgtcattaatcttaataaaatttaagaccggcaacctgctgctctattcaattattatattttaatagtaaaatgaaaag |
39441241 |
T |
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| Q |
237 |
tctggtaactattgcattcatctcccacataaagcgttatcttcaagatctga |
289 |
Q |
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| T |
39441240 |
tctggtaactattgcattcatctcccacataaagcgttatcttcaagatctga |
39441188 |
T |
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Target: chr1 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 94 - 289
Target Start/End: Original strand, 42867798 - 42867980
Alignment:
| Q |
94 |
gagcaatgctagatgcagtcgctctatcaatcacttttaggcacttcctcatggattggtccacgtcattaatcttaataaaatttaagaccggcaacct |
193 |
Q |
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| T |
42867798 |
gagcaatgctagatgcagtcgctctatcaatcgcttttaggcacttcctcatggattggtc-------------ttaataaaatttaagaccggcaacct |
42867884 |
T |
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| Q |
194 |
gctgctctattcaattattatattttaatagtaaaatgaaaagtctggtaactattgcattcatctcccacataaagcgttatcttcaagatctga |
289 |
Q |
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| T |
42867885 |
gctgctctattcaattattatattttaataataaaatgaaaagtctggtaactattgccatcatctcccacataaaacgttatcttcaagatctga |
42867980 |
T |
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