View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_236 (Length: 288)
Name: NF10481A_low_236
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_236 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 12 - 285
Target Start/End: Original strand, 3271730 - 3272003
Alignment:
| Q |
12 |
atgaatagtttattactatcatttatggtatcatattcaatttgtaatggtattgaaatccaatctggacctctgtgaatgatcaatatatactcttcca |
111 |
Q |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3271730 |
atgaatagttcattactatcatttatggtatcctattcaatttgtaatggtattgaaatccaatctggagctctgtgaatgatcaatatatactcttcca |
3271829 |
T |
|
| Q |
112 |
tcacatagagacaattgtttaagacattgaatttaagcagatgttctaacatttggacaaacggtgaatgcatggaacaaatgttaaaaacaaacacaaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3271830 |
tcacatagagacaattgtttaagacattgaatttaagcagatgttctaacatttggacaaacggtgaatacatggaacaaatgttaaaaacaaacacaaa |
3271929 |
T |
|
| Q |
212 |
acgctatgctgagctgtgagacaaagaatctaatatgatggaggaccacagaatgtgctatctccaaaacaata |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3271930 |
acgctatgctgagctgtgagacaaagaatctaatatgatggaggaccacagaatgtgctatctccaaaacaata |
3272003 |
T |
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