View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_237 (Length: 288)
Name: NF10481A_low_237
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_237 |
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Alignment Details
Target: chr2 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 60 - 282
Target Start/End: Original strand, 7996961 - 7997183
Alignment:
| Q |
60 |
tacactacaaatattaattcagaatctatctactatatatagtagtagtcaccataagccaaatctaaatccacatctacctcttcctctttcttaattt |
159 |
Q |
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| T |
7996961 |
tacactacaaatattaattcagaatctatctactatatatagtagtagtcaccataagccaaatctaaatccacatctacctcttcctctttcttaattt |
7997060 |
T |
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| Q |
160 |
cctagtgcaagttttcatcaacaaatttannnnnnnnagaggaagaaaaacacattgaagaaaaatatggctctttctaggaaaccatacttatactcaa |
259 |
Q |
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| T |
7997061 |
cttagtgcaagttttcatcaacaaatttattttttttagaggaagaaaaacacattgaagaaaaatatggctctttctaggaaaccatactcatactcaa |
7997160 |
T |
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| Q |
260 |
agatggataaagaagatcctgaa |
282 |
Q |
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| T |
7997161 |
agatggataaagaagatcctgaa |
7997183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 7996916 - 7996945
Alignment:
| Q |
14 |
gaatgaccccaccttaatttattttttgca |
43 |
Q |
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| T |
7996916 |
gaatgaccccaccttaatttattttttgca |
7996945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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