View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_238 (Length: 288)

Name: NF10481A_low_238
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_238
NF10481A_low_238
[»] chr1 (1 HSPs)
chr1 (14-288)||(16781230-16781504)


Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 14 - 288
Target Start/End: Complemental strand, 16781504 - 16781230
Alignment:
Q  14 agagaccgaagtagttggcctgggaccaccaggaaccaaaggagcactggaaggccttgacatcatagtcacttgtgcaataggtttttcggttggtctt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16781504 agagaccgaagtagttggcctgggaccaccaggaaccaaaggagcactggaaggccttgacatcatagtcacttgtgcaataggtttttcggttggtctt 16781405  T
Q  114 ggaggtgaagtcttctggatttctgttttaggcacaattgttggttgcgaagcagacgttaaagatgaagatgtatctttacctgtctgttgtgtgacac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16781404 ggaggtgaagtcttctggatttctgttttaggcacaattgttggttgtgaagcagacgttaaagatgaagatgtatctttacctgtctgttgtgtgacac 16781305  T
Q  214 taaaagatgttttcctgacattaacaggtgagggtaagtttctagaaggactcctcggcgaggatggccctactg 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16781304 taaaagatgttttcctgacattaacaggtgagggtaagtttctagaaggactcctcggcgaggatggccctactg 16781230  T

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