View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_239 (Length: 287)
Name: NF10481A_low_239
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_239 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 5035460 - 5035735
Alignment:
| Q |
7 |
tttggtgttcagcataatcagaaattgtggaagatggctttaatctcaagtacgaggagtgaagacattctatcaaattttgaatgaattgttttatgta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5035460 |
tttggtgttcagcataatcagaaattgtggaagatggctttaatctcaagtacgaggagtgaagacattctatcaaattttgaatgaattgttttatgta |
5035559 |
T |
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| Q |
107 |
atttaataacttttatagcagtgtttgtgaaataaaaaacttacaaagcacatatattaaaga-nnnnnnnaaggatatctattaaagaattaaaaaatt |
205 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5035560 |
atttaataacttttataacagagtttgtgaaataaaaaacttacaaagcacatatattaaagattttttttaaggatatctattaaagaattaaaaaatt |
5035659 |
T |
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| Q |
206 |
cacttcacaaggattcaactcaaatatcacaataatctttacttgagttatgttgttggtggaaagacctcgtttg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5035660 |
cacttcacaaggattcaactcaaatatcacaataatctttacttgagttatgttgttggtggaaagacctcgtttg |
5035735 |
T |
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