View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_241 (Length: 287)
Name: NF10481A_low_241
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_241 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 23 - 287
Target Start/End: Original strand, 38816319 - 38816583
Alignment:
| Q |
23 |
caactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgt |
122 |
Q |
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| T |
38816319 |
caactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgt |
38816418 |
T |
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| Q |
123 |
ccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaa |
222 |
Q |
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| T |
38816419 |
ccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaa |
38816518 |
T |
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| Q |
223 |
gaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttcat |
287 |
Q |
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| T |
38816519 |
gaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttcat |
38816583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 221
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
72 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
171 |
Q |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
172 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
221 |
Q |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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