View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_247 (Length: 285)
Name: NF10481A_low_247
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_247 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 2 - 270
Target Start/End: Original strand, 49775164 - 49775432
Alignment:
| Q |
2 |
ttaagaacatgtatttttcggcataatacttgagaacattatcatttgtatgtgaatgaatatgcattttaggattctgtatatttcatatcacattaca |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
49775164 |
ttaagaacatgtatttttcggcataatacttgagaacattatcatttgtatgtgaatgaatgtgcattttaggattctgtatatttcatatcacattaga |
49775263 |
T |
|
| Q |
102 |
ttgcaaactctcaatggattgattatggctttcctctttcatttgtttatgtgtatgtacattttaggattctgtttannnnnnnnatcacattagattg |
201 |
Q |
| |
|
|||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49775264 |
ttgcaaactcacaatgaattgattatgactttcctctttcatttgtttatgtgtatgtacattttaggattctgtttattttttttatcacattagattg |
49775363 |
T |
|
| Q |
202 |
gaaactgacaatggattgattatgattttcctctttcatttgttcatggctattatccgtagtagttgc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
49775364 |
gaaactgacaatggattgattatgattttcctctttcatttgttcatggctattatccatagtagttgc |
49775432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 7993974 - 7993825
Alignment:
| Q |
1 |
attaagaacatgtatttttcggcataatacttgagaacattatcatttgtatgtgaatgaatatg--cattttaggattctgtatatttcatatcacatt |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7993974 |
attaagaacatgtatttttcggcataatacttgagaacattatcatttgtatgtgaatgattatgtacattttaggattctgtatatttcatatcacatt |
7993875 |
T |
|
| Q |
99 |
acattgcaaactctcaatggattgattatggctttcctctttcatttgtt |
148 |
Q |
| |
|
| |||| ||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
7993874 |
agattggaaactgacaatggattgattatgattttcctctttcatttgtt |
7993825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 7993882 - 7993787
Alignment:
| Q |
188 |
atcacattagattggaaactgacaatggattgattatgattttcctctttcatttgttcatggctattatccgtagtagttgcaagtgtcattgct |
283 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7993882 |
atcacattagattggaaactgacaatggattgattatgattttcctctttcatttgttcatggctattatccgtagtagttgcaagtgtcattgct |
7993787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University