View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_248 (Length: 285)
Name: NF10481A_low_248
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_248 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 4 - 267
Target Start/End: Complemental strand, 39932795 - 39932532
Alignment:
| Q |
4 |
aggtattcgaattggacttatcaatcgattcataacttttcaaacacatgtttatttgaactccctttacctgtaggaatatgtcttggatatgtcgatt |
103 |
Q |
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| T |
39932795 |
aggtattggaattggacttatcaatcgattcataacttttcaaacacatatttattcgaactccctttacctgtaggaatacgtcttggatatgtcgatc |
39932696 |
T |
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| Q |
104 |
gtgttatgggcggagtcctattcatggggacatggtagaattgagagaagttgtaggtattatgtcgagtctcttgttgcccctgttaaggaacttgtct |
203 |
Q |
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| T |
39932695 |
gtgttacgggcggagtcctattcatggggacatggtagaattgagagaagttgtaggtattatgtcgagtctcttgttgcccctgttaaggaacttgtct |
39932596 |
T |
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| Q |
204 |
tcactcgagaaatgcaacaattaagataaatgtgtcttgatttgaaaatattttctcaatgcat |
267 |
Q |
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| T |
39932595 |
tcactcgagaaatgcaacaattaagataaatgtgtcttgatttgaaaatattttcttaatgcat |
39932532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 7 - 166
Target Start/End: Complemental strand, 18148843 - 18148679
Alignment:
| Q |
7 |
tattcgaattggacttatcaatcgattcataacttttcaaacaca-----tgtttatttgaactccctttacctgtaggaatatgtcttggatatgtcga |
101 |
Q |
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| T |
18148843 |
tattggaattggacttatcaatcgattcataacttttcaaacacaaccaatatttattcgaaccccctttacctgtaggaatacgtcttggatctgccga |
18148744 |
T |
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| Q |
102 |
ttgtgttatgggcggagtcctattcatggggacatggtagaattgagagaagttgtaggtattat |
166 |
Q |
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| T |
18148743 |
ttgtgttatgggcggagtcctattcatggggacctggtagaattgggagaagctgtaggtattat |
18148679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 145
Target Start/End: Original strand, 49069066 - 49069112
Alignment:
| Q |
99 |
cgattgtgttatgggcggagtcctattcatggggacatggtagaatt |
145 |
Q |
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| T |
49069066 |
cgattatgttatgggcggagtcctattcatggggacctggtagaatt |
49069112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 12952829 - 12952873
Alignment:
| Q |
7 |
tattcgaattggacttatcaatcgattcataacttttcaaacaca |
51 |
Q |
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| T |
12952829 |
tattggaattggacttatcaatcgattcataacttttcaaacaca |
12952873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 2363376 - 2363420
Alignment:
| Q |
7 |
tattcgaattggacttatcaatcgattcataacttttcaaacaca |
51 |
Q |
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| T |
2363376 |
tattggaattggacttatcaatcagttcatagcttttcaaacaca |
2363420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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