View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_253 (Length: 283)
Name: NF10481A_low_253
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_253 |
 | |
|
| [»] chr4 (10 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 179 - 283
Target Start/End: Complemental strand, 37180154 - 37180050
Alignment:
| Q |
179 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37180154 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
37180055 |
T |
|
| Q |
279 |
acaaa |
283 |
Q |
| |
|
||||| |
|
|
| T |
37180054 |
acaaa |
37180050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 37181583 - 37181687
Alignment:
| Q |
179 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37181583 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
37181682 |
T |
|
| Q |
279 |
acaaa |
283 |
Q |
| |
|
||||| |
|
|
| T |
37181683 |
acaaa |
37181687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 179 - 283
Target Start/End: Original strand, 37189700 - 37189804
Alignment:
| Q |
179 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
278 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37189700 |
tttaccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcct |
37189799 |
T |
|
| Q |
279 |
acaaa |
283 |
Q |
| |
|
||||| |
|
|
| T |
37189800 |
acaaa |
37189804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 37180316 - 37180220
Alignment:
| Q |
20 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37180316 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg |
37180220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 37189538 - 37189634
Alignment:
| Q |
20 |
catcaaactatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37189538 |
catcaaactatcaatggcaatattcaaatccttgatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgccatcttttg |
37189634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 183 - 283
Target Start/End: Complemental strand, 37187833 - 37187733
Alignment:
| Q |
183 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttccaagtcttcctacaa |
282 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
37187833 |
ccttcaattccaaatatgcctcagggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcctagctttcctacaa |
37187734 |
T |
|
| Q |
283 |
a |
283 |
Q |
| |
|
| |
|
|
| T |
37187733 |
a |
37187733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 183 - 231
Target Start/End: Complemental strand, 38704268 - 38704220
Alignment:
| Q |
183 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38704268 |
ccttcaattccaaatatgcctcaaggaaatcttcctccattgcctacta |
38704220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 44 - 116
Target Start/End: Original strand, 37181445 - 37181517
Alignment:
| Q |
44 |
caaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg |
116 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||| ||||| |||| |||||||||||||||||| ||||||||| |
|
|
| T |
37181445 |
caaatccttcattgcaactttacttcttgttgtcacaatgtcaagcatgagcctagaagctcgccatcttttg |
37181517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 115
Target Start/End: Complemental strand, 37187988 - 37187901
Alignment:
| Q |
28 |
tatcaatggcaatattcaaatccttcatcacaactttacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatctttt |
115 |
Q |
| |
|
||||||||||| | |||||||||||||| | |||||||||| |||||||| || |||| |||||||||||||||||| |||||||| |
|
|
| T |
37187988 |
tatcaatggcatcaagcaaatccttcatcatagctttacttcttgttgtgaccatgtcaagcatgagcctagaagctcgccatctttt |
37187901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 116
Target Start/End: Complemental strand, 38704369 - 38704293
Alignment:
| Q |
44 |
caaatccttcatcacaactt----tacttctagttgtgacaatatcaaacatgagcctagaagctcgtcatcttttg |
116 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||||||||||| |||| ||||| |||||||||||||||||||||| |
|
|
| T |
38704369 |
caaatccttaatcacaacttaatttacttcttgttgtgacaatgtcaagcatgaacctagaagctcgtcatcttttg |
38704293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 27096701 - 27096768
Alignment:
| Q |
201 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcc |
268 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27096701 |
cctcaaggtaatgttcctccattgcctactatcccttctatgcctaagctcactatgccaccacttcc |
27096768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 27103004 - 27103071
Alignment:
| Q |
201 |
cctcaaggaaatcttcctccattgcctactatcccttctatgcctaaactcactatgccaccacttcc |
268 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
27103004 |
cctcaaggtaatgttcctccattgcctaccatcccttcagtgcctaagctcactatgccaccacttcc |
27103071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University