View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_263 (Length: 280)
Name: NF10481A_low_263
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_263 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 5 - 280
Target Start/End: Complemental strand, 20816837 - 20816562
Alignment:
| Q |
5 |
caagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgcactaaatcgtctatacccaatttcttcaaa |
104 |
Q |
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| T |
20816837 |
caagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgtactaaatcgtctatacccaatttcttcaaa |
20816738 |
T |
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| Q |
105 |
gtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcatt |
204 |
Q |
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| T |
20816737 |
gtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcatt |
20816638 |
T |
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| Q |
205 |
tccctggttgtgttcttccagcacgcccagatctctgaaccgcactagcctttgatattggagacaccaataaaga |
280 |
Q |
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| T |
20816637 |
tccctggttgtgttcttccagcacgcccagatctctgaaccgcactagcctttgatattggagacaccaataaaga |
20816562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 5 - 280
Target Start/End: Original strand, 38779308 - 38779583
Alignment:
| Q |
5 |
caagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgcactaaatcgtctatacccaatttcttcaaa |
104 |
Q |
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|||||||||||||||||||||||| ||||| |||||||| || |||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||| |
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| T |
38779308 |
caagtaattcaacacttccaaagcacgcatcaaggtttcaggggcaggagggtccatgaagtcaaaatgaactaaatcatctatacccagtttcttcaat |
38779407 |
T |
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| Q |
105 |
gtaagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcatt |
204 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38779408 |
gtaagaactgtgttggcaagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttcggtataaagtctaaagcatt |
38779507 |
T |
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| Q |
205 |
tccctggttgtgttcttccagcacgcccagatctctgaaccgcactagcctttgatattggagacaccaataaaga |
280 |
Q |
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|||| || || |||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||| ||||| |
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| T |
38779508 |
tccccggctgagttcttccagcacgtccagacctctggtgtgcactagcttttgatattggagacaccaacaaaga |
38779583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 6 - 280
Target Start/End: Original strand, 33388268 - 33388542
Alignment:
| Q |
6 |
aagtaattcaacacttccaaagcgcgcattaaggtttctggtgcaggagggtccataaagtcaaaatgcactaaatcgtctatacccaatttcttcaaag |
105 |
Q |
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||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| | |
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| T |
33388268 |
aagtaattcaacacttccaaagcacgcattaaggtttcaggagcaggagggtccatgaagtcaaaatgaactaaatcatctatacccaatttcttcaatg |
33388367 |
T |
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| Q |
106 |
taagaactgtgttggcgagattagatctcaaaatttcaggataggtctgcggctgaagatcattattgaaacttctttccgtataaagtctaaagcattt |
205 |
Q |
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||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||||| |||||| ||||||| |
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| T |
33388368 |
taagaaccgtgtttgcaagattagatctcaaaatttcaggataggtctgcggctgaagatcattactgaaacttatttcggtatagagtctatagcattt |
33388467 |
T |
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| Q |
206 |
ccctggttgtgttcttccagcacgcccagatctctgaaccgcactagcctttgatattggagacaccaataaaga |
280 |
Q |
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||| ||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
33388468 |
ccccggttgagttcttccggcacgacctgatctctggtgtgcactagcctttgatattggagacaccaacaaaga |
33388542 |
T |
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