View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_264 (Length: 280)
Name: NF10481A_low_264
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_264 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 29204427 - 29204166
Alignment:
| Q |
13 |
atactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtttct |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204427 |
atactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtttct |
29204328 |
T |
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| Q |
113 |
gcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtccaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204327 |
gcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtccaaac |
29204228 |
T |
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| Q |
213 |
gcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaa |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29204227 |
gcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaa |
29204166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 274
Target Start/End: Original strand, 12647449 - 12647710
Alignment:
| Q |
13 |
atactagttttattttacaacttcaggaatagatacatgctttttgtacgcactgtttaataacatagttcgctaaatcaatctctctagctttgtttct |
112 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
12647449 |
atactagttttattttacaacttcaggaatggatacatgctttttgtatgcactgtttaataacatagtttgctaaatcaatctctctagctttgtttct |
12647548 |
T |
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| Q |
113 |
gcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtccaaac |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647549 |
gcaaagtaattatttgattcatttcggtttaaggaagcttaccttaatagcaaataaatcaccagtcgatcttttctgggcaagaaaaactcgtccaaac |
12647648 |
T |
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| Q |
213 |
gcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaa |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12647649 |
gcacctctgcttattggttttattatttcaaaatcttcaatagaggttctgtccttagaaaa |
12647710 |
T |
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