View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_265 (Length: 280)
Name: NF10481A_low_265
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_265 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 38967629 - 38967365
Alignment:
| Q |
1 |
tcccacaaagcggttccatgatattgcaagctgggaatgcttagcatccaatcacctgcttgaggagagtgttgtaaatatgtgattggcaccaatttag |
100 |
Q |
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| T |
38967629 |
tcccacaaagcggttccatgatattgcaagctgggaatgcttagcatccaatcacctgcttgaggagagtgttgtaaatatgtgattggcaccaatttag |
38967530 |
T |
|
| Q |
101 |
tattctcagtacttatttagttgtatctgtaactattaggacatatctgattctggtttttcttgattatgatttagtaggcttagtcaatataatcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38967529 |
tattctcagtacttatttagttgtatctgtaactattaggacatatctgattctggtttttcttgattatgatttagtaggcttagtcaatataatcaca |
38967430 |
T |
|
| Q |
201 |
ttagtgcttgtacttcaatcctcaattaacaagattccgttttctttaattttccatttgcatag |
265 |
Q |
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| T |
38967429 |
ttagtgcttgtacttcaatcctcaattaacaagattccgttttctttaattttccatttgcatag |
38967365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 14 - 254
Target Start/End: Original strand, 39899430 - 39899677
Alignment:
| Q |
14 |
ttccatgatattgcaagctgggaatgcttagcatccaatcacctgcttgaggagagtgttgtaaatatgtgattggcaccaattt-------agtattct |
106 |
Q |
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| T |
39899430 |
ttccaggatattgcaagctgggaatgattggcacccagtgacctgcttgagtggagtgttgtaaatatgtaattggtaccaatttaggatttagtattct |
39899529 |
T |
|
| Q |
107 |
cagtacttatttagttgtatctgtaactattaggacatatctgattctggtttttcttgattatgatttagtaggcttagtcaatataatcacattagtg |
206 |
Q |
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| T |
39899530 |
cagtgcttatttagttgaatctgtgattattatgacagatctggttcttgtttttcttgattatgatttattaggcttagtcaatataatcacattagtg |
39899629 |
T |
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| Q |
207 |
cttgtacttcaatcctcaattaacaagattccgttttctttaattttc |
254 |
Q |
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| T |
39899630 |
cttgtacttcaattatcaattaacaagattccgttttctctaattttc |
39899677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 134 - 255
Target Start/End: Original strand, 39912480 - 39912601
Alignment:
| Q |
134 |
tattaggacatatctgattctggtttttcttgattatgatttagtaggcttagtcaatataatcacattagtgcttgtacttcaatcctcaattaacaag |
233 |
Q |
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| T |
39912480 |
tattaggaaagatctgattcttgtttttcttgattacgagttattcagcttagtcaatataatcacattagtgcttgtacttcaatcatcaattaacaag |
39912579 |
T |
|
| Q |
234 |
attccgttttctttaattttcc |
255 |
Q |
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|||||||||||| ||||||||| |
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| T |
39912580 |
attccgttttctctaattttcc |
39912601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 39866256 - 39866320
Alignment:
| Q |
173 |
tttagtaggcttagtcaatataatcacattagtgcttgtacttcaatcctcaattaacaagattc |
237 |
Q |
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| T |
39866256 |
tttattaggcttattctatataatcacattagtgcttgtacatcaatcctcaattgataagattc |
39866320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 39727734 - 39727690
Alignment:
| Q |
190 |
atataatcacattagtgcttgtacttcaatcctcaattaacaaga |
234 |
Q |
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| T |
39727734 |
atataatcacattagtgcttgtacataaatcctcaattgacaaga |
39727690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 39849260 - 39849306
Alignment:
| Q |
190 |
atataatcacattagtgcttgtacttcaatcctcaattaacaagatt |
236 |
Q |
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| T |
39849260 |
atataatcacattagggtttgtacttcaattctcaattaaaaagatt |
39849306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 39858659 - 39858696
Alignment:
| Q |
198 |
acattagtgcttgtacttcaatcctcaattaacaagat |
235 |
Q |
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| T |
39858659 |
acattagtacttgtatttcaatcctcaattaacaagat |
39858696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 29624527 - 29624477
Alignment:
| Q |
156 |
gtttttcttgattatgatttagtaggcttagtcaatataatcacattagtg |
206 |
Q |
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| T |
29624527 |
gtttttcttgattaagatttattaggcttagcctatataatcacattagtg |
29624477 |
T |
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