View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_27 (Length: 446)
Name: NF10481A_low_27
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Original strand, 3591978 - 3592413
Alignment:
| Q |
15 |
atggacatcaacattggttcacttttttcttttagttaatatgcaagactttatgtctcaattgcaggttacttatgcctaaatatatttgagtcctcaa |
114 |
Q |
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| T |
3591978 |
atggacatcaacattggttcacttttttcttgtagttaatatgcaagactttatgtctcaattgcaggttacttatgcctaaatatatttgagtcctcaa |
3592077 |
T |
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| Q |
115 |
catggttttaaattgcagttgtgcctgtcgttgctataactttgcaattttgacattgtcgataaatgcggttcctccaaaacatttgtattgcagccgc |
214 |
Q |
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| T |
3592078 |
catggttttaaattgcagttgtgcctgtcgttgctataactttgcaattttgacattgtcgataaatgcggttcctccaaaacatttgtattgcagccgc |
3592177 |
T |
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| Q |
215 |
atttacgatttaaaacttaagtccacaatataaactggtttaaaagaaaaactaatagggaatgctaagaataccctgtgcaatgtacaatgaagtcagc |
314 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3592178 |
atttacgatttaaaacttaagtccacaatatgaactggtttaaaagaaaaactaatagggaatgctaagaataccctgtgcaatgtacaatgaagtcagc |
3592277 |
T |
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| Q |
315 |
aataactgcatttccatctttaaaaaccactgcaccatcttcatgaacactgtcaatctgcattgttcaagatcaagaagat----caaacaatctaagc |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3592278 |
gataactgcatttccatctttaaaaaccactgcaccatcttcatgaacactgtcaatctgcattgttcaagatcaagaagatcgaccaaacaatctaagc |
3592377 |
T |
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| Q |
411 |
aacagttatccaaaagtttatggatactaatgtcat |
446 |
Q |
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| T |
3592378 |
aacagttatccaaaagtttatggatactaatgtcat |
3592413 |
T |
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