View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_280 (Length: 276)
Name: NF10481A_low_280
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_280 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 46238459 - 46238733
Alignment:
| Q |
1 |
gacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagtt |
100 |
Q |
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| T |
46238459 |
gacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagtt |
46238558 |
T |
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| Q |
101 |
gctgatgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgt |
200 |
Q |
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| T |
46238559 |
gctgatgtaagttgtctattatgtgaatccctttactttcctctgtttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgt |
46238658 |
T |
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| Q |
201 |
taacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgttatg |
275 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238659 |
taacgaggaaaaggaggaaaacgttaaagatgttgtgaattttttagggtttttaattgatgtgaacttgttatg |
46238733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 3456199 - 3455925
Alignment:
| Q |
1 |
gacgcggaaagaaggagagaagacgaacgaagttgcgaagaagatgcatgaaacgatcgaaggacaatcgacggttatgaaaaacgttggagctccagtt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3456199 |
gacgccgaaagaaggagagaagacgaacgaagttgcgaagaagatgcaggaaacaatcgaagggcaatcgacggttatgaaaaacgttggagctccagtt |
3456100 |
T |
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| Q |
101 |
gctgatgtaagttgtctattatgtgaatccctttactttcctccctttactcctatgaatatgcatgctatttctttgtttattcttgttgtggtactgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456099 |
gctgatgtaagttgtctattatgtgaatccctttactttcttctgtttactcctaagaatatgcatgctatttctttgtttattcttgttgtggtactgt |
3456000 |
T |
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| Q |
201 |
taacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggtttttaattgatgtgaacttgttatg |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
3455999 |
taacgaggaaaaggaggaaaacgttaaagaagttgtgaattttttagggttttaaattgatgtgaacttgttatg |
3455925 |
T |
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