View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_283 (Length: 276)
Name: NF10481A_low_283
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_283 |
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Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 7 - 264
Target Start/End: Complemental strand, 15582151 - 15581894
Alignment:
| Q |
7 |
ccttgatggggtgatatgctcaagttttgatggatatatgaatgcaacctttggtgaatgcattaatgatctaaagttttggatttttaggtgatatggg |
106 |
Q |
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| T |
15582151 |
ccttgatggggtgatatgctcaagttttgatggatatatgaatgcaacctttggtgaatgcattaatgatctaatgttttggatttttaggtgatatggg |
15582052 |
T |
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| Q |
107 |
atgagattggggagagtgacactgatagagacaatatgcttcttcaactggagcaagagtgccttgacatttattacagaaaggttgagcaaaccagaag |
206 |
Q |
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| T |
15582051 |
atgagattggggagagtgacactgatagagacaatatgcttcttcaactggagcaagagtgccttgacatttattacagaaaggttgagcaaaccagaaa |
15581952 |
T |
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| Q |
207 |
gcacaaagctgacttaaataagtggttggatgatgctgaatctgaactcgcggatatt |
264 |
Q |
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| T |
15581951 |
gcacaaagctgacttaaataagtggttggatgatgctgaatctgaactcgcagatatt |
15581894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 33 - 257
Target Start/End: Original strand, 8332611 - 8332839
Alignment:
| Q |
33 |
ttgatggatatatgaatgcaacctttggtgaatgcattaatgatctaaagttttg-gatttttaggtgatatgggatgagattgggga---gagtgacac |
128 |
Q |
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| T |
8332611 |
ttgatggatatatgaatgtatacttttgtgaatgcattaatgacctaaagttttgttttttttaggcgatatgggatgagactggagaatggagtgacac |
8332710 |
T |
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| Q |
129 |
tgatagagacaatatgcttcttcaactggagcaagagtgccttgacatttattacagaaaggttgagcaaaccagaaggcacaaagctgacttaaataag |
228 |
Q |
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| T |
8332711 |
tgatagagacaatatgcttcttcagatagagcaagagtatagtgaaatttatcatagaaaagttgaggacaccataaaacacaaagattacttgaataag |
8332810 |
T |
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| Q |
229 |
tggttggatgatgctgaatctgaactcgc |
257 |
Q |
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| T |
8332811 |
gtgttggatgattttcaatctgaaatcgc |
8332839 |
T |
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