View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_284 (Length: 276)
Name: NF10481A_low_284
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_284 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 36292356 - 36292631
Alignment:
| Q |
1 |
acaaactaaaactgttttgaaattgttaagttttaagattcttaataagaaattaagaatttgtattgataatcttgtttttctcactcaggatagcatt |
100 |
Q |
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| T |
36292356 |
acaaactaaaactgttttgaaattgttaagttttaagattcttaataagaaattaagaatttgtattgataatcttgtttttcgcactcaggatagcatt |
36292455 |
T |
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| Q |
101 |
gagcatgattgaagatgccgaaaataaaggcttcattactcctgcaaaggtatattactgatcaatcatgtttgataactaggttctctttcccggactc |
200 |
Q |
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| T |
36292456 |
gagcatgattgaagatgccgaaaataaaggcttcattactcctgcaaaggtatattactgatcaatcatgtttgataactaggttctctttcccggactc |
36292555 |
T |
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| Q |
201 |
ataaaactcgtaagatgatgagttttagtctatcatagatccattcaactatttttcaaagacactcaccatgtga |
276 |
Q |
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| T |
36292556 |
ataaaactcgtaagatgatgagttttagtctatcatagatccattcaactatttttcaaagacactcaccatgtga |
36292631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 36280884 - 36281035
Alignment:
| Q |
1 |
acaaactaaaactgttttgaaattgttaagttttaagattcttaataagaaattaagaatttgtattgataatcttgtttttctcactcaggatagcatt |
100 |
Q |
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||||||| ||||||||| | ||||||| ||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||| | || |
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| T |
36280884 |
acaaacttgaactgttttaatattgttaggttttaagattcttagtaagaaattaagaatttgtaatgataatattgtttttctcacttaggatatcgtt |
36280983 |
T |
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| Q |
101 |
gagcatgattgaagatgccgaaaataaaggcttcattactcctgcaaaggta |
152 |
Q |
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| T |
36280984 |
gagcatgattgaagatgctgagagtaaaggcctcattactcctggaaaggta |
36281035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 51 - 152
Target Start/End: Original strand, 36286436 - 36286537
Alignment:
| Q |
51 |
aattaagaatttgtattgataatcttgtttttctcactcaggatagcattgagcatgattgaagatgccgaaaataaaggcttcattactcctgcaaagg |
150 |
Q |
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||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| || |||||||| |||||||||||| ||||| |
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| T |
36286436 |
aattaagaatttgtagtgataatcttttttttctcacgcaggatagcattgagcatgattgaagatgctgagaataaaggtctcattactcctggaaagg |
36286535 |
T |
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| Q |
151 |
ta |
152 |
Q |
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|| |
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| T |
36286536 |
ta |
36286537 |
T |
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