View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_286 (Length: 274)
Name: NF10481A_low_286
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_286 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 46 - 274
Target Start/End: Original strand, 37978940 - 37979169
Alignment:
| Q |
46 |
cttaccaagtgactctagcaaaaattcgagggccttgcccttgtcccatttaattgcgggacgaatctccaatacctgtattaaacaaattgacattgaa |
145 |
Q |
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| T |
37978940 |
cttaccaagtgactctagcaaaaattcgagggccttgcccttgtcccatttaattgcgggacgaatctccaatacctgtattaaacaa-ttgacattgaa |
37979038 |
T |
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| Q |
146 |
agtgagacatctcttaagtatttcttattcttaatccctgtcataatcacctttgaactaattaaaccacaccccaccat--aaaaaatatacaccccct |
243 |
Q |
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| T |
37979039 |
agttagacatctcttaagtatttcttattcttaatccctgtcataatcacctttgaactaattaaatcacaccccaccataaaaaaaatatacaccccct |
37979138 |
T |
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| Q |
244 |
ccaaaaaactgattataaagaaaatagaacc |
274 |
Q |
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| T |
37979139 |
ccaaaaaactgattataaagaaaatagaacc |
37979169 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 26143014 - 26143067
Alignment:
| Q |
46 |
cttaccaagtgactctagcaaaaattcgagggccttgcccttgtcccatttaat |
99 |
Q |
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| T |
26143014 |
cttaccaagtgactctagcaaaaattcaagagcccttcctttgtcccatttaat |
26143067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 33493946 - 33493996
Alignment:
| Q |
64 |
caaaaattcgagggccttgcccttgtcccatttaattgcgggacgaatctc |
114 |
Q |
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| T |
33493946 |
caaaaattcaagagccttgcccttgtcccatttgatagtgggacgaatctc |
33493996 |
T |
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