View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_288 (Length: 273)
Name: NF10481A_low_288
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_288 |
 | |
|
| [»] chr3 (29 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 10363988 - 10363716
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10363988 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
10363889 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10363888 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtctctgaggatt |
10363789 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
10363788 |
ttgatattatgagagtaacaaagtctctccttgaatctgccacttccataacttcggaaagcaataatcttga |
10363716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 10088669 - 10088940
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10088669 |
ggtgggtaggaaggatgataaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
10088768 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10088769 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcatgggtttgtgtgtctgaggatt |
10088868 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
10088869 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttcgacaacttcggatagcaatgatcttg |
10088940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 10195552 - 10195823
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10195552 |
ggtgggtagaaaggatgataaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
10195651 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10195652 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcatgggtttgtgtgtctgaggatt |
10195751 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |
|
|
| T |
10195752 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttcgacaacttcggatagcaatgatcttg |
10195823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 10126807 - 10127079
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||| || | |||||||||||||||||||||||||| |||||| |
|
|
| T |
10126807 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatctcagagagacacatcccataataatataggtgttgttgcaattttgggcatg |
10126906 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10126907 |
ggaggtttgggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
10127006 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10127007 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttga |
10127079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 10580480 - 10580752
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | |||| | | |||||||||||||||||||||||||| |||||| |
|
|
| T |
10580480 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcacagagaaacacaatccataataatataggtgttgttgcaattttgggcatg |
10580579 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
10580580 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgacatgaaggcgtgggtttgtgtgtctgaggatt |
10580679 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580680 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
10580752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 10663405 - 10663677
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||| |||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
10663405 |
ggtgggtaggaagggtgacaaagagacaataatgaacatgttgctatcacagagagacacaacccataataatataggtgttgttgcaattttgggcatg |
10663504 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10663505 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
10663604 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
10663605 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttgggatagcaaagatcttga |
10663677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 10031882 - 10032154
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || || | |||||||||||||||||||||||||| |||||| |
|
|
| T |
10031882 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcacagagagacgcatcccataataatataggtgttgttgcaattttgggcatg |
10031981 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
10031982 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcctgggcttgtgtgtctgaggatt |
10032081 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
10032082 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggatagcaaagatcttga |
10032154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 10260577 - 10260849
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
10260577 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgttgctatcacagagagaaacaaccaacaataatataggtgttgttgcaattttgggcatg |
10260676 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |
|
|
| T |
10260677 |
ggaggtttaggaaaaactacccttgctcaacttgtttacaatgataaagaagttcaacaacattttgacatgaaggcgtgggcttgtgtgtctgaggatt |
10260776 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |||||||| | || || ||| | |||||||||||| |
|
|
| T |
10260777 |
ttgatattatgagagtaaccaagtctctccttgaatcagtcacttctagaaattgggatatcaataatcttga |
10260849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 10184121 - 10184393
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||| |||||| | ||| ||||||||||||||||||||| |||||| |
|
|
| T |
10184121 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgttgctgtcacagagagacacaacccataatgctataggtgttgttgcaattttgggcatg |
10184220 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||| |||| ||||||||| ||||||| |
|
|
| T |
10184221 |
ggaggtttaggaaaaactacccttgctcaacttgtttacaatgataaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtccgaggatt |
10184320 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
10184321 |
ttgatattatgagagtaaccaagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttga |
10184393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 273
Target Start/End: Original strand, 11769114 - 11769385
Alignment:
| Q |
2 |
gtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgg |
101 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||| | | |||||||||||||||||||||||||| ||||||| |
|
|
| T |
11769114 |
gtgggtaggaagaatgacaaagagacaataatgaacatgttgctatcacagagagacacaatccataataatataggtgttgttgcaattttgggcatgg |
11769213 |
T |
|
| Q |
102 |
gaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattt |
201 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
11769214 |
gaggtttaggaaaaactacccttgctcaacttgtctacaatgataaagaagttcaacaatattttgatttgaaggcatgggcttgcgtgtctgaggattt |
11769313 |
T |
|
| Q |
202 |
tgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||||| |||||||| | ||||| ||| |||||||||||||| |
|
|
| T |
11769314 |
tgatattatgagagtaaccaggtctctccttgaatcggtcacttcaagaacttgggatagcaataatcttga |
11769385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 10434227 - 10433962
Alignment:
| Q |
8 |
aggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtt |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||| | ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10434227 |
aggaaggatgacaaagagacaataatgaacatgttgctatcacagagaaacacaactcataataagataggtgttgttgcaattttaggcatgggaggtt |
10434128 |
T |
|
| Q |
108 |
taggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgatat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||| |
|
|
| T |
10434127 |
taggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcctgggcttgtgtgtctcaggattttgatat |
10434028 |
T |
|
| Q |
208 |
tatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
| ||| |||||| ||||||||||||||||| |||||||||| ||||| ||| |||||||||||||| |
|
|
| T |
10434027 |
tttgaaagtaaccaagtctctccttgaatcggtcacttccagaacttgggatagcaataatcttga |
10433962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 9838740 - 9839012
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||| | ||||| |||||| | || ||||||||||||||||||||||| |||||| |
|
|
| T |
9838740 |
ggtgggtaggaagggtgacaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatg |
9838839 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||| |
|
|
| T |
9838840 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgatgaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtctgaggatt |
9838939 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| |||||||||| ||| | ||| |||||||||||||| |
|
|
| T |
9838940 |
ttgatattttgagagtaaccaagtctctccttgaatcggtcacttccataacatgggatagcaataatcttga |
9839012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 9849618 - 9849890
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||| ||||||| | ||||| |||||| | || ||||||||||||||||||||||| |||||| |
|
|
| T |
9849618 |
ggtgggtaggaagggtgacaaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatg |
9849717 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||| |||| ||||||||||||||||| |
|
|
| T |
9849718 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgatgaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtctgaggatt |
9849817 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| |||||||||| ||| | ||| |||||||||||||| |
|
|
| T |
9849818 |
ttgatattttgagagtaaccaagtctctccttgaatcggtcacttccataacatgggatagcaataatcttga |
9849890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 10376035 - 10375763
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||||||| |||||||| ||| ||| ||| | | |||||||||||||||||||||||||| |||||| |
|
|
| T |
10376035 |
ggtgggtaggaaggatgataaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatg |
10375936 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10375935 |
ggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggatt |
10375836 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||||| |||||||| | ||| | ||| |||||||||||||| |
|
|
| T |
10375835 |
ttgatattttgagagtaaccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
10375763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 10077163 - 10077420
Alignment:
| Q |
16 |
tgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaa |
115 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| || | |||| | ||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10077163 |
tgacaaagagacaataatgaacatgttgctatcagggatgggcggaacccataataagataggtgttgttgcaattttgggcatgggaggtttaggaaaa |
10077262 |
T |
|
| Q |
116 |
actacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagag |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| | | |||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
10077263 |
actacccttgcccaacttgtttacaatgattataaagttcgataccattttgatttgcaggcatgggcttgtgtgtctgaggattttgatattatgagag |
10077362 |
T |
|
| Q |
216 |
taacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| | ||||| ||| | |||| ||||||| |
|
|
| T |
10077363 |
taaccaagtctctccttgaatcgatcacttctagaacttgggataacaatgatcttga |
10077420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 11131212 - 11130944
Alignment:
| Q |
5 |
ggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggag |
104 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||| ||||||||||||| || | | | || ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
11131212 |
ggtagaaaggatgacaaagagacaataacgaacatgttgctatcaaagagcagcactagcaataacaatatcggtgttgttgcaattttaggtatgggag |
11131113 |
T |
|
| Q |
105 |
gtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttga |
204 |
Q |
| |
|
|| | |||||||| |||||||| ||| ||| |||||||||| || |||||||| |||| |||||| | || ||||||| |||||| || ||||||||||| |
|
|
| T |
11131112 |
gtgtcggaaaaacaacccttgcacaaattgcttacaatgatgaaaaagttcaagaacactttgatctcaaagcatgggcttgtgtatcggaggattttga |
11131013 |
T |
|
| Q |
205 |
tattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||| | |||||||| || |||||||||||||||||||||| | ||| ||||| |||||||||||| |
|
|
| T |
11131012 |
tattttaagagtaactaaaactctccttgaatctgtcacttcaagggcttgggaaaacaataatcttga |
11130944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 11149040 - 11148772
Alignment:
| Q |
5 |
ggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggag |
104 |
Q |
| |
|
||||| |||||||||||||||| ||||| ||||||| ||||||||||||| || | | | || ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
11149040 |
ggtagaaaggatgacaaagagataataacgaacatgttgctatcaaagagcagcactagcaataacaatatcggtgttgttgcaattttaggtatgggag |
11148941 |
T |
|
| Q |
105 |
gtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttga |
204 |
Q |
| |
|
|| | |||||||| |||||||| ||| ||| |||||||||| || |||||||| |||| |||||| | || ||||||| |||||| || ||||||||||| |
|
|
| T |
11148940 |
gtgtcggaaaaacaacccttgcacaaattgcttacaatgatgaaaaagttcaagaacactttgatctcaaagcatgggcttgtgtatcggaggattttga |
11148841 |
T |
|
| Q |
205 |
tattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||| | |||||||| || |||||||||||||||||||||| | ||| ||||| |||||||||||| |
|
|
| T |
11148840 |
tattttaagagtaactaaaactctccttgaatctgtcacttcaagggcttgggaaaacaataatcttga |
11148772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 273
Target Start/End: Complemental strand, 11160203 - 11159935
Alignment:
| Q |
5 |
ggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggag |
104 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||| |||||||| |||| || | | || |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
11160203 |
ggtagaaatgatgataaagagacaataatgaacatgttgctatcagagagtagcactggcaataacaatataggcgttgttgcaattttaggtatgggag |
11160104 |
T |
|
| Q |
105 |
gtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttga |
204 |
Q |
| |
|
|| | || ||||| || ||||| ||||||||||||||| || || |||||||| | ||||||||||| || ||||||| |||||| |||||||||||||| |
|
|
| T |
11160103 |
gtgtcggtaaaacgacacttgcacaacttgtttacaataatgaaaaagttcaagatcattttgatttcaaagcatgggcttgtgtatctgaggattttga |
11160004 |
T |
|
| Q |
205 |
tattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||| | ||||| || |||| ||||||||||||||||| | | ||| ||||| |||||||||||| |
|
|
| T |
11160003 |
tattttatctgtaactaaaactcttcttgaatctgtcacttcaagagcttgggaaaccaataatcttga |
11159935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 270
Target Start/End: Original strand, 10889189 - 10889454
Alignment:
| Q |
5 |
ggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggag |
104 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||||| |||||||| |||| || | | || ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
10889189 |
ggtagaaatgatgataaagagacaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggag |
10889288 |
T |
|
| Q |
105 |
gtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttga |
204 |
Q |
| |
|
|| | || ||||| || ||||| |||||||||||||||||| || |||||||| | || |||||| | || ||||||| |||||| |||||||||||||| |
|
|
| T |
10889289 |
gtgtcggtaaaacgacacttgcacaacttgtttacaatgatgaaaaagttcaagagcactttgatctcaaagcatgggcttgtgtatctgaggattttga |
10889388 |
T |
|
| Q |
205 |
tattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatct |
270 |
Q |
| |
|
|||| | | ||||| || |||| ||||||||||| ||||| | | ||| ||||| ||||||||| |
|
|
| T |
10889389 |
tattttaactgtaactaaaactcttcttgaatctgtgacttcaagagcttgggaaaacaataatct |
10889454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 8861169 - 8861437
Alignment:
| Q |
5 |
ggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggag |
104 |
Q |
| |
|
||||| || ||||| ||||||||| ||||||||||| |||||||| |||| || | | || ||||| |||||||||||||||||||| ||||||| |
|
|
| T |
8861169 |
ggtagaaatgatgataaagagacagtaatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggag |
8861268 |
T |
|
| Q |
105 |
gtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttga |
204 |
Q |
| |
|
|| | || ||||| || ||||| |||||||||||||||||| || |||||||| | || |||||| | || ||||||| |||||| || ||||||||||| |
|
|
| T |
8861269 |
gtgtcggtaaaacgacacttgcacaacttgtttacaatgatgaaaaagttcaagagcactttgatctcaaagcatgggcttgtgtatcagaggattttga |
8861368 |
T |
|
| Q |
205 |
tattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
|||| | ||||| || |||| ||||||||||||||||| | | ||| ||||| |||||||||||| |
|
|
| T |
8861369 |
tatttcaactgtaactaaaactcttcttgaatctgtcacttcaagagcttgggaaaacaataatcttga |
8861437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 10527283 - 10527455
Alignment:
| Q |
68 |
aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
167 |
Q |
| |
|
|||||| |||||||||||||||| || || ||||||||| | || ||||| |||||||| |||||||||||||||||| || | ||| |||| ||||||| |
|
|
| T |
10527283 |
aataatttaggtgttgttgcaatcttgggtatgggaggtgtcggtaaaacaacccttgcacaacttgtttacaatgatgaaaaggttgaacaccattttg |
10527382 |
T |
|
| Q |
168 |
atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
240 |
Q |
| |
|
|| | ||||| ||||||| ||| || |||||||| ||| || |||||||||| ||||||||| |||||||||| |
|
|
| T |
10527383 |
atctcaaggcctgggtttatgtatcagaggatttcgatgttgtgagagtaaccaagtctctcattgaatctgt |
10527455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 68 - 238
Target Start/End: Original strand, 10517410 - 10517580
Alignment:
| Q |
68 |
aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
167 |
Q |
| |
|
|||||| ||||||||| ||||||| | || |||||||| | || ||||| |||||||| || |||||||||||||| | ||||| |||||||||||| |
|
|
| T |
10517410 |
aataatttaggtgttgctgcaattgtgggtatgggaggcgtcggtaaaacgacccttgcacagtttgtttacaatgatgcaaaagttgaacaacattttg |
10517509 |
T |
|
| Q |
168 |
atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatct |
238 |
Q |
| |
|
|||| || || ||||||||||| ||||||||||||||| |||| |||| ||| |||||| ||||||||||| |
|
|
| T |
10517510 |
atttcaaagcctgggtttgtgtatctgaggattttgatgttattagagcaaccaagtctatccttgaatct |
10517580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 11782126 - 11781954
Alignment:
| Q |
68 |
aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
167 |
Q |
| |
|
|||||| |||||||||| |||||||| || |||||||| | || ||||| |||||||| || ||||||||||||||| ||||| |||||||||||| |
|
|
| T |
11782126 |
aataatttaggtgttgtcgcaattttgggtatgggaggcgtcggtaaaacgacccttgcacagcttgtttacaatgatgtgaaagttgaacaacattttg |
11782027 |
T |
|
| Q |
168 |
atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
240 |
Q |
| |
|
|||| || | ||||||||||| || |||||||| ||| || | ||| |||| |||||||||||||||||||| |
|
|
| T |
11782026 |
atttcaaagtctgggtttgtgtatcggaggatttcgatgttgttagaataaccaagtctctccttgaatctgt |
11781954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 13160935 - 13161077
Alignment:
| Q |
77 |
ggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | ||||||||| |||| | |
|
|
| T |
13160935 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13161034 |
T |
|
| Q |
177 |
catgggtttgtgtgtctgaggattttgatattatgagagtaac |
219 |
Q |
| |
|
||||||||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13161035 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13161077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 13170986 - 13171128
Alignment:
| Q |
77 |
ggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | ||||||||| |||| | |
|
|
| T |
13170986 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13171085 |
T |
|
| Q |
177 |
catgggtttgtgtgtctgaggattttgatattatgagagtaac |
219 |
Q |
| |
|
||||||||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13171086 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13171128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 13332859 - 13333001
Alignment:
| Q |
77 |
ggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | ||||||||| |||| | |
|
|
| T |
13332859 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13332958 |
T |
|
| Q |
177 |
catgggtttgtgtgtctgaggattttgatattatgagagtaac |
219 |
Q |
| |
|
||||||||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13332959 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13333001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 10500502 - 10500674
Alignment:
| Q |
68 |
aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
167 |
Q |
| |
|
|||||| ||||||||||||||||||| || |||||||| | || ||||| || ||||| |||||||||||||| || | || || || ||||||||| |
|
|
| T |
10500502 |
aataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgacgataaaattgaagaacattttg |
10500601 |
T |
|
| Q |
168 |
atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
240 |
Q |
| |
|
|| ||||||||||| ||||||| | |||||||| ||| || ||||| |||| || ||||||||||||||||| |
|
|
| T |
10500602 |
atctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatctgt |
10500674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 13344044 - 13344183
Alignment:
| Q |
77 |
ggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | ||||||||| |||| | |
|
|
| T |
13344044 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13344143 |
T |
|
| Q |
177 |
catgggtttgtgtgtctgaggattttgatattatgagagt |
216 |
Q |
| |
|
||||||||||| || |||||||| |||||| ||||||| |
|
|
| T |
13344144 |
tctgggtttgtgtatcggaggatttcgatattctgagagt |
13344183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 219
Target Start/End: Original strand, 13289620 - 13289762
Alignment:
| Q |
77 |
ggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| || |||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | ||||||||| |||| | |
|
|
| T |
13289620 |
ggtgtggtcgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13289719 |
T |
|
| Q |
177 |
catgggtttgtgtgtctgaggattttgatattatgagagtaac |
219 |
Q |
| |
|
||||||||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13289720 |
tctgggtttgtgtatcggaggatttcgatattttgagagtaac |
13289762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 26906776 - 26907048
Alignment:
| Q |
1 |
ggtgggtaggaaggatgacaaagagacaataatgaacatgctgctatcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||| | |||||||||||||||||||||||||| |||||| |
|
|
| T |
26906776 |
ggtgggtaggaaggatgacaaagagacaataatgaatatgttgctatcagagagagacacaacccataataatataggtgttgttgcaattttgggcatg |
26906875 |
T |
|
| Q |
101 |
ggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26906876 |
ggaggtttaggaaaaactacccttgcccaacttctttacaatgataaagaagttcaacggcattttgatttgaaggcatgggtttgtgtgtctgaggatt |
26906975 |
T |
|
| Q |
201 |
ttgatattatgagagtaacaaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttga |
273 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| |||||||||| ||||| ||| | |||||||||||| |
|
|
| T |
26906976 |
ttgatattatgagagtaaccaaatctctccttgaatcggtcacttccagaacttgggataccaataatcttga |
26907048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 240
Target Start/End: Complemental strand, 17853060 - 17852895
Alignment:
| Q |
75 |
taggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaa |
174 |
Q |
| |
|
|||||||||||||||| || || ||||||||| | || ||||| |||||||| || ||||||||||||||| || | ||| |||| ||||||||| | || |
|
|
| T |
17853060 |
taggtgttgttgcaatattggggatgggaggtgtcggtaaaacgacccttgcacagcttgtttacaatgatgaaaaggttgaacatcattttgatctcaa |
17852961 |
T |
|
| Q |
175 |
ggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
240 |
Q |
| |
|
|| ||||||||||| || || ||||||||| || |||||||||| |||||||||||||||||||| |
|
|
| T |
17852960 |
agcctgggtttgtgtatcagaagattttgatgttgtgagagtaaccaagtctctccttgaatctgt |
17852895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 205
Target Start/End: Complemental strand, 7129044 - 7128961
Alignment:
| Q |
122 |
cttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgat |
205 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||||||||||||| ||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
7129044 |
cttgctcaacttgtatacaatgacaaagaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgatgattttgat |
7128961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 205
Target Start/End: Original strand, 7482094 - 7482177
Alignment:
| Q |
122 |
cttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgat |
205 |
Q |
| |
|
||||| |||||||| |||||||| |||||||| |||||||||||| | ||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
7482094 |
cttgctcaacttgtatacaatgacaaagaagtgcaacaacattttcagttgaaaaagtgggtttgtgtttctgatgattttgat |
7482177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 205
Target Start/End: Complemental strand, 7722294 - 7722235
Alignment:
| Q |
146 |
aaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgat |
205 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
7722294 |
aaagaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgatgattttgat |
7722235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 240
Target Start/End: Original strand, 11484963 - 11485135
Alignment:
| Q |
68 |
aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
167 |
Q |
| |
|
|||||| ||||||||||||||||||| | |||||||| | || ||||| |||||||| |||||||||||||| ||| || ||||| |||| ||||||| |
|
|
| T |
11484963 |
aataatttaggtgttgttgcaattttggttatgggaggcgtcggtaaaacgacccttgcacaacttgtttacaacgatgaaaaagttgaacagcattttg |
11485062 |
T |
|
| Q |
168 |
atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgt |
240 |
Q |
| |
|
|| | || |||||||||||||| || |||||||| ||| | |||| |||| ||||| |||||||||||||| |
|
|
| T |
11485063 |
atctcaaagcatgggtttgtgtatcggaggatttcgatgtcgtgaggataaccaagtccctccttgaatctgt |
11485135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 44957832 - 44957664
Alignment:
| Q |
68 |
aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
167 |
Q |
| |
|
|||||| ||||||||||||| | ||||| ||||||||| | || ||||| || || || ||||||||||||||||||| | ||||| |||||||||| | |
|
|
| T |
44957832 |
aataatttaggtgttgttgccaccttaggtatgggaggtgtcggtaaaacgactctcgcacaacttgtttacaatgatataaaagttgaacaacatttcg |
44957733 |
T |
|
| Q |
168 |
atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaat |
236 |
Q |
| |
|
|| | || |||||| | ||||| || |||||||| || || | ||| ||||||||||||| ||||||| |
|
|
| T |
44957732 |
atctcaaagcatggatatgtgtatcagaggatttcaatgttgttagaataacaaagtctcttcttgaat |
44957664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 136002 - 135860
Alignment:
| Q |
77 |
ggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | ||||||||| |||| | |
|
|
| T |
136002 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
135903 |
T |
|
| Q |
177 |
catgggtttgtgtgtctgaggattttgatattatgagagtaac |
219 |
Q |
| |
|
||||||||||| || |||||||| |||||| |||||||||| |
|
|
| T |
135902 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
135860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 77 - 219
Target Start/End: Complemental strand, 146053 - 145911
Alignment:
| Q |
77 |
ggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaagg |
176 |
Q |
| |
|
||||| ||||||||||| || ||||| ||| | || ||||| || |||||||||||| |||| |||||||||||||||||| | ||||||||| |||| | |
|
|
| T |
146053 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
145954 |
T |
|
| Q |
177 |
catgggtttgtgtgtctgaggattttgatattatgagagtaac |
219 |
Q |
| |
|
||||||||||| || |||||||| |||||| |||||||||| |
|
|
| T |
145953 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
145911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 68 - 246
Target Start/End: Original strand, 29836589 - 29836767
Alignment:
| Q |
68 |
aataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttg |
167 |
Q |
| |
|
|||||||||||||| || |||||| ||||||||||||| | || ||||| ||||| || | |||| | ||||| | |||||||| || | ||||||| |
|
|
| T |
29836589 |
aataatataggtgtagtcgcaattacaggcatgggaggtatcggtaaaacgaccctcgctcgacttatatacaaccaggaagaagttaaaaatcattttg |
29836688 |
T |
|
| Q |
168 |
atttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctccttgaatctgtcacttc |
246 |
Q |
| |
|
|| | | | ||||||||||||||||| ||||||||||| |||||||||| || |||||||||||| ||||||||| |
|
|
| T |
29836689 |
atgtacaagtctgggtttgtgtgtctgaagattttgatatgttgagagtaaccaaatctctccttgaagttgtcacttc |
29836767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 219
Target Start/End: Complemental strand, 31679845 - 31679705
Alignment:
| Q |
79 |
tgttgttgcaattttaggcatgggaggtttaggaaaaactacccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggca |
178 |
Q |
| |
|
||||||| ||||||| |||||||||||| | || ||||| |||| || |||||| |||||||||||||||| |||||| ||| ||||||| | || || |
|
|
| T |
31679845 |
tgttgtttcaattttcggcatgggaggtgtcggtaaaacagccctagctcaacttctttacaatgataaagatgttcaagaacgttttgatgtaaaagct |
31679746 |
T |
|
| Q |
179 |
tgggtttgtgtgtctgaggattttgatattatgagagtaac |
219 |
Q |
| |
|
||||||||| |||| || || |||||| || |||| ||||| |
|
|
| T |
31679745 |
tgggtttgtctgtccgaagagtttgatgttttgagggtaac |
31679705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 825916 - 826028
Alignment:
| Q |
130 |
acttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaacaaagtctctc |
229 |
Q |
| |
|
|||||||||||||||||| ||||| | | |||||||||||||| | ||||||||||| | ||||||||||||||| ||| | ||||| |||| |
|
|
| T |
825916 |
acttgtttacaatgataagaaagttgatgagcattttgatttgaaagtctgggtttgtgtcaccgaggattttgatatttctagaatcacaaaagctcta |
826015 |
T |
|
| Q |
230 |
cttgaatctgtca |
242 |
Q |
| |
|
||||||||||||| |
|
|
| T |
826016 |
cttgaatctgtca |
826028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University