View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_295 (Length: 270)
Name: NF10481A_low_295
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_295 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr3 (5 HSPs) |
| |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] scaffold0661 (1 HSPs) |
| | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] scaffold0084 (1 HSPs) |
| |
|
| [»] scaffold0012 (1 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] scaffold0126 (1 HSPs) |
| | |
|
| [»] scaffold0218 (1 HSPs) |
| | |
|
| [»] scaffold0035 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 16848069 - 16847800
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
16848069 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggcttttcccgttcactttaattggtaaagctaaagactggttattgactt |
16847970 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16847969 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
16847870 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16847869 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
16847800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 20965364 - 20965611
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| | |||| | |||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20965364 |
gagttttgtgttcctccagcaaatgttactgaagatcaaaagaaactcagactattcccgttcactttaaccggtaaagctaaagactggttattgactt |
20965463 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
||||||||||||| || |||| |||||| || | ||||| |||||| ||||||||| ||||||||||||||| ||| |||||||||| ||||| ||||| |
|
|
| T |
20965464 |
tgcctaatgggaccatccaaaaatgggatgagctggagctgaagtttttagagaagtttttccctatgtccaaatacctggataagaaacaagagatagc |
20965563 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaag |
248 |
Q |
| |
|
| ||| ||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
20965564 |
caactttaggcaaggggaaggtgagtcactttatgatgcttgggaaag |
20965611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 5896173 - 5895904
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
5896173 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggcttttcccgttcactttaattggtaaagctaaagactggttattgactt |
5896074 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5896073 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttatagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
5895974 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5895973 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
5895904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 16322789 - 16322520
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16322789 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggctattcccgttcactttaatcggtaaagctaaagactggttattgactt |
16322690 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16322689 |
tgcctaatgggactattcaaacatgggaggaattaaagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
16322590 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16322589 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
16322520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 18504764 - 18504495
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18504764 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggctattcccgttcactttaatcggtaaagctaaagactggttattgactt |
18504665 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18504664 |
tgcctaatgggactattcaaacatgggaggaattatagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
18504565 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18504564 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
18504495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 22018288 - 22018557
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| | | |||| ||||||||| ||||| || |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22018288 |
gagttttgtgttcctccagcaaatgttactgatgaccaaaagaaacttaggctattttcgttcactttaaccggtaaagctaaagactggttattgactt |
22018387 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22018388 |
tgcctaatgggactattcaaacatgggaagaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
22018487 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||| |||||||||||| ||||||| | ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22018488 |
aagctttcggcaaggtgaaagtgaatcattgtatgatgcttgggaaaggttcaatttgctactgaagaga |
22018557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 194
Target Start/End: Original strand, 11785769 - 11785960
Alignment:
| Q |
2 |
agtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgacttt |
101 |
Q |
| |
|
||||| |||| |||||| |||||||| | |||||| ||||||||| | | | || || |||||||| | || |||||||||||||||||| ||||||| |
|
|
| T |
11785769 |
agttttgtgtacctccagcaaatgttactgaagaccaaaagaaactgatgttgtttcctttcactttgaccgataaagctaaagactggttgctgacttt |
11785868 |
T |
|
| Q |
102 |
gcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaaga |
194 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||||| | |||| | ||||||| ||| ||||||||||||||||| || ||||| ||||| |
|
|
| T |
11785869 |
acctaatggtacaattcaaacatgggaggagctagagctgaggtttttggagaagt-tttacctatgtccaagtacttagacaagaaacaaga |
11785960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 24435939 - 24436204
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
24435939 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggcttttcccgttcacattaatcggtaaagctaaagactggttattgactt |
24436038 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24436039 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
24436138 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaa |
266 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
24436139 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaagattcaatttgcttctgaa |
24436204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 154 - 270
Target Start/End: Complemental strand, 24902620 - 24902504
Alignment:
| Q |
154 |
aagtatttccctatgtccaagtacttggataagaagcaagaaatagcaagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttca |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |||| |
|
|
| T |
24902620 |
aagtatttccctatgtccaagtacttggataagaagcaagaaatagcaagcttttagcaaggtgaaggtgaatcactttatgatgcttgcgaaagattca |
24902521 |
T |
|
| Q |
254 |
atttgcttctgaagaga |
270 |
Q |
| |
|
||||| | ||||||||| |
|
|
| T |
24902520 |
atttgttactgaagaga |
24902504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 24902696 - 24902618
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaag |
79 |
Q |
| |
|
|||||| ||||||||||| |||||||| | |||||| ||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
24902696 |
gagttttgtgttcctccagcaaatgttactgaagaccaaaagaaactcaggctattcccgttcactttaaccggtaaag |
24902618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 22921437 - 22921706
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||| ||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
22921437 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactgaggctattcccgttcactttaatcggtaaagctaaagactggttattgactt |
22921536 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22921537 |
ttcccaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
22921636 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22921637 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
22921706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 24401096 - 24401365
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| |||| ||||||||||||||| | |||||| ||||||||| ||||| ||||| ||||| |||| ||| || | |||||||||||| |||| || |
|
|
| T |
24401096 |
gagttttgtgtgcctccaacaaatgttactgaagaccaaaagaaactgaggctattccccttcacgttaaccggaaagggtaaagactggttgttgaatt |
24401195 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24401196 |
tgcctaatgggactattcaaacatgggaggagttagagcttaattttctagaaaagtatttccctatgtccaaatacttggataagaagcaagaaatagc |
24401295 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||| |||||||| |||| ||||||||| |||||||| |||||||| ||||||||||| |||| |||| |
|
|
| T |
24401296 |
aagctttcggcaaggggaaggtgaatcactctatgatgcctgggaaagattcaatttgctcctgaggaga |
24401365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0661 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0661
Description:
Target: scaffold0661; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 7818 - 8083
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| || |||||| |||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
7818 |
gagttttgtgttcctccagcaaatgttaatgaagaccaaaagaaactcaggcttttaccgttcacattaataggtaaagctaaagactggttattgactt |
7917 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7918 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
8017 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaa |
266 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8018 |
aagcttccggcaaggtgaaggtgaatcactttatgatgcttgggaaagattcaatttgcttctgaa |
8083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 14702814 - 14703083
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| | |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
14702814 |
gagttttgtgttcctccagcaaatgttactgaagaccaaaagaaactcaggctattcccgttcactttaaccggtaaagctaaagactagttattgactt |
14702913 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14702914 |
tgcctaatgggactattcaaacatgggaggagttagagcttaagtttctagaaaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
14703013 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
14703014 |
aagctttcggcaaggggaaggtgaatcactttatgatgcttgggaaagattcaatttgctactgaagaga |
14703083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0084 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: scaffold0084
Description:
Target: scaffold0084; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 20191 - 20460
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| |||||| ||||||||||||||| ||| |||||||||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
20191 |
gagttttgtgttcctccagcaaatgttacagaagaccaaaagaaactcaggctattcacgttcactttaaccggtaaagctaaagactagttattaactt |
20290 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20291 |
tgcctaatgggactattcaaacatgggaagaattagagctaaagtttctagaaaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
20390 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
20391 |
aagctttcggcaaggggaaggtgaatcactttatgatgcttgggaaagattcaatttgctactgaagaga |
20460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 26128 - 25859
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| ||| |||| | |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
26128 |
gagttttgtgttcctccagcaactgttactgaagaccaaaagaaactcaggctattcccgttcactttaaccggtaaagctaaagattggttattaactt |
26029 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
| || |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26028 |
taccgaatgggactattcaaacatgggaggagttagagcttaagtttctagaaaaatatttccctatgtccaagtacttggataagaagcaagaaatagc |
25929 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
25928 |
aagctttcggcaaggggaaggtgaatcactgtatgatgcttgggaaaggttcaatttgttactgaagaga |
25859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 34142409 - 34142151
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||| || | |||||| ||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34142409 |
gagttttgtgttcctccagcaaacgtcactgaagaccaaaagaaacttaggctatttccgttcactttaaccggtaaagctaaagactggttattgactt |
34142310 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34142309 |
tgcctaatgggactattcaaacatgggaagaattagagctgaagtttc-----------ttccctatgtccaagtacttggataagaagcaagaaatagc |
34142221 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||| ||||||||||| ||||||| | |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34142220 |
aagctttcggcaaggtgagagtgaatcattgtatgatgcttgggaaaggttcaatttgccactgaagaga |
34142151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 134 - 270
Target Start/End: Original strand, 22141066 - 22141202
Alignment:
| Q |
134 |
tagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagcaagcttccggcaaggtgaagatgaatcacttta |
233 |
Q |
| |
|
||||||||||||| | |||||||| || ||||||||||| || | ||||||||| ||||| || | | ||| |||||||| || ||| ||||| || |
|
|
| T |
22141066 |
tagagcttaagttcttggagaagtactttcctatgtccaaatattgggataagaaacaagagatttccatctttcggcaaggggagagtgagtcactata |
22141165 |
T |
|
| Q |
234 |
tgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
|||||||| |||||| || ||||||||||| |||||| |
|
|
| T |
22141166 |
tgatgcttaggaaagatttaatttgcttcttaagaga |
22141202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0126 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0126
Description:
Target: scaffold0126; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 13521 - 13274
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| | |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| | |
|
|
| T |
13521 |
gagttttgtgttcctccagcaaatgttactgaagaccaaaagaaactcaggctattcccgttcactttaaccggtaaagctaaagactggttattgacat |
13422 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
| ||||||||||| || ||||||||||| || | ||||| |||||| ||||||||| ||||||||||||||||||| |||||||||| ||||| ||||| |
|
|
| T |
13421 |
ttcctaatgggaccatccaaacatgggatgagctggagctgaagtttttagagaagtttttccctatgtccaagtacctggataagaaacaagagatagc |
13322 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaag |
248 |
Q |
| |
|
| ||| ||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
13321 |
caactttaggcaaggggaaggtgagtcactttatgatgcttgggaaag |
13274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0218 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: scaffold0218
Description:
Target: scaffold0218; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 11326 - 11573
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| ||||| || | || || ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11326 |
gagttttgtgttcctccagcaaattttagtgaacacaaaaagaaactcaggctattcccgttcactttaaccggtaaagctaaagactggttattgactt |
11425 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
| ||||||| ||| |||||||||||||| || ||||||||||||||| || |||||| ||||||||||||||||||| | |||||||| ||||| ||||| |
|
|
| T |
11426 |
ttcctaatgagaccattcaaacatgggatgagttagagcttaagtttttatagaagtttttccctatgtccaagtacctagataagaaacaagagatagc |
11525 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaag |
248 |
Q |
| |
|
| ||| ||||||| |||| ||| ||||||||||||| ||||||||| |
|
|
| T |
11526 |
caactttaggcaaggggaaggtgagtcactttatgatgattgggaaag |
11573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 13843547 - 13843794
Alignment:
| Q |
1 |
gagtttggtgttcctccaacaaatgttgatcaagaccgaaagaaactcaggcttttcccgttcactttaaacggtaaagctaaagactggttattgactt |
100 |
Q |
| |
|
|||||| ||||||||||| |||||||| | |||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13843547 |
gagttttgtgttcctccagcaaatgttactgaagaccaaaagaaactcaggctattcccgttcactttaaccggtaaagctaaagactggttattgactt |
13843646 |
T |
|
| Q |
101 |
tgcctaatgggactattcaaacatgggaggaattagagcttaagtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagc |
200 |
Q |
| |
|
|||| |||||||| || |||||||| || || || || || |||||| ||||||||| ||||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
13843647 |
tgccgaatgggaccatccaaacatgagatgagttggacctgaagtttttagagaagtttttccctatgtccaagtacctggataagaaacaagggatagc |
13843746 |
T |
|
| Q |
201 |
aagcttccggcaaggtgaagatgaatcactttatgatgcttgggaaag |
248 |
Q |
| |
|
| ||| ||| || |||| ||| ||||||||||||||||||||||| |
|
|
| T |
13843747 |
caactttatgcacggggaaggtgagtcactttatgatgcttgggaaag |
13843794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 270
Target Start/End: Original strand, 47862 - 48030
Alignment:
| Q |
106 |
aatgggactattcaaacatgggaggaattagagcttaa----gtttctagagaagtatttccctatgtccaagtacttggataagaagcaagaaatagca |
201 |
Q |
| |
|
||||| || |||||||||||||| || ||||||||||| ||| |||||||||| || ||||||||||| || | ||| ||||| ||||| || ||| |
|
|
| T |
47862 |
aatggaaccattcaaacatgggaagagttagagcttaattaagttcttagagaagtaatttcctatgtccaaatattgggacaagaaacaagagattgca |
47961 |
T |
|
| Q |
202 |
agcttccggcaaggtgaagatgaatcactttatgatgcttgggaaaggttcaatttgcttctgaagaga |
270 |
Q |
| |
|
| || ||||||| || |||| |||||||||||| |||||| || || || ||||||||||||||| |
|
|
| T |
47962 |
aagtttaggcaaggagagagtgaaacactttatgatgtttgggagagatttaacttgcttctgaagaga |
48030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University