View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_296 (Length: 270)
Name: NF10481A_low_296
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_296 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 26 - 265
Target Start/End: Complemental strand, 14560142 - 14559903
Alignment:
| Q |
26 |
ctctaaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaa |
125 |
Q |
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| T |
14560142 |
ctctaaaaccaaaagtgaatcccacctcaacacttaagaaatttcaatcaattaaactcctttcatgataataacgtgtttcatatgcttgttgtgacaa |
14560043 |
T |
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| Q |
126 |
gcttttccctccttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
225 |
Q |
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| T |
14560042 |
gcttttccctccttcaccaccacagttttgtgtcagtggaggtccacacaactcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
14559943 |
T |
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| Q |
226 |
ccagtttgtatttttcccaccaagtgattacaagagaggt |
265 |
Q |
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| T |
14559942 |
ccagtttgtatttttcccaccaagtgattacaagagaggt |
14559903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 38 - 265
Target Start/End: Complemental strand, 14569885 - 14569658
Alignment:
| Q |
38 |
aagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaagcttttccctcc |
137 |
Q |
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| T |
14569885 |
aagtgaattccaactcaacacttaagaaattctaatcaattgaacccctgtcgtgaaaataaggtgtttcatatgcttgttgttacaagcttttccctcc |
14569786 |
T |
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| Q |
138 |
ttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatt |
237 |
Q |
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| T |
14569785 |
ttcaccaacacaattttgtgtcagtggaggtccacacaactctttattacctataagtgaatcttcttgaaatgattgaatttgtgttccaggtggtatt |
14569686 |
T |
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| Q |
238 |
tttcccaccaagtgattacaagagaggt |
265 |
Q |
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| T |
14569685 |
tttcccaccaaatgagtacaagagaggt |
14569658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 32549371 - 32549283
Alignment:
| Q |
163 |
ggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatttttcccaccaagtg |
251 |
Q |
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| T |
32549371 |
ggaggtccaaatagcccttcattgccaataaatgaatctgcttgaaatgattgaatctgtgtcccagttggtattcttcccaccaagtg |
32549283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 32549498 - 32549451
Alignment:
| Q |
30 |
aaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaat |
77 |
Q |
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| T |
32549498 |
aaaaccaaaagtgaatcccaactcagcactcaagaaattccaatcaat |
32549451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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