View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_299 (Length: 269)

Name: NF10481A_low_299
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_299
NF10481A_low_299
[»] chr4 (14 HSPs)
chr4 (5-269)||(35648523-35648787)
chr4 (5-150)||(42756767-42756912)
chr4 (5-144)||(13239995-13240132)
chr4 (18-181)||(11560175-11560337)
chr4 (3-122)||(13909807-13909926)
chr4 (5-139)||(24182446-24182580)
chr4 (76-139)||(28474909-28474972)
chr4 (66-149)||(50158185-50158268)
chr4 (102-144)||(37516433-37516475)
chr4 (7-140)||(13228698-13228830)
chr4 (60-117)||(42729474-42729531)
chr4 (12-49)||(53204135-53204172)
chr4 (3-115)||(316527-316639)
chr4 (66-122)||(24180685-24180741)
[»] chr3 (21 HSPs)
chr3 (5-269)||(20934187-20934451)
chr3 (29-134)||(10975672-10975777)
chr3 (42-139)||(12125483-12125580)
chr3 (60-144)||(6087209-6087293)
chr3 (36-144)||(52753009-52753117)
chr3 (17-150)||(6436834-6436967)
chr3 (17-134)||(9262775-9262892)
chr3 (3-122)||(9266733-9266852)
chr3 (16-139)||(50331915-50332038)
chr3 (12-106)||(40416326-40416420)
chr3 (80-149)||(32976491-32976560)
chr3 (80-149)||(42400403-42400472)
chr3 (30-118)||(9265297-9265385)
chr3 (85-149)||(20935022-20935086)
chr3 (5-140)||(431974-432109)
chr3 (30-133)||(9611704-9611807)
chr3 (12-139)||(37837482-37837609)
chr3 (67-142)||(50331814-50331889)
chr3 (60-140)||(17764127-17764206)
chr3 (60-140)||(19065447-19065526)
chr3 (85-149)||(25225353-25225417)
[»] scaffold1312 (1 HSPs)
scaffold1312 (5-129)||(1-125)
[»] scaffold1782 (1 HSPs)
scaffold1782 (5-94)||(1271-1360)
[»] chr6 (14 HSPs)
chr6 (15-181)||(26596686-26596852)
chr6 (7-144)||(24397911-24398047)
chr6 (3-134)||(34515092-34515224)
chr6 (5-74)||(18089938-18090007)
chr6 (3-139)||(11554334-11554470)
chr6 (19-138)||(9449570-9449689)
chr6 (12-98)||(24175056-24175141)
chr6 (30-139)||(1599689-1599798)
chr6 (30-139)||(4852808-4852917)
chr6 (80-149)||(7428505-7428574)
chr6 (66-142)||(1599838-1599914)
chr6 (30-141)||(24175742-24175852)
chr6 (80-149)||(28365722-28365791)
chr6 (66-150)||(21988818-21988902)
[»] chr1 (12 HSPs)
chr1 (15-144)||(27342194-27342326)
chr1 (42-150)||(31089526-31089634)
chr1 (5-139)||(16852891-16853025)
chr1 (7-139)||(43387047-43387179)
chr1 (65-144)||(49879114-49879193)
chr1 (80-149)||(20306753-20306822)
chr1 (65-138)||(31421396-31421469)
chr1 (80-149)||(40946516-40946585)
chr1 (85-149)||(1992419-1992483)
chr1 (80-149)||(30001762-30001831)
chr1 (66-150)||(15524712-15524796)
chr1 (48-128)||(43386447-43386527)
[»] chr2 (15 HSPs)
chr2 (7-138)||(36720074-36720205)
chr2 (3-139)||(45054019-45054155)
chr2 (60-142)||(5788099-5788181)
chr2 (7-140)||(3395400-3395533)
chr2 (3-139)||(45058404-45058541)
chr2 (30-122)||(45661119-45661211)
chr2 (5-139)||(14872722-14872856)
chr2 (70-139)||(14869750-14869819)
chr2 (5-122)||(45662564-45662681)
chr2 (30-142)||(41753979-41754091)
chr2 (5-144)||(6466912-6467051)
chr2 (4-150)||(45659129-45659276)
chr2 (80-149)||(19040694-19040763)
chr2 (80-149)||(39839108-39839177)
chr2 (7-138)||(5788821-5788950)
[»] scaffold0074 (1 HSPs)
scaffold0074 (7-181)||(30797-30970)
[»] chr8 (18 HSPs)
chr8 (42-141)||(18431546-18431645)
chr8 (20-148)||(45528184-45528312)
chr8 (5-139)||(15276766-15276900)
chr8 (5-139)||(15457135-15457269)
chr8 (29-144)||(16220245-16220360)
chr8 (98-144)||(14715280-14715326)
chr8 (16-136)||(42797242-42797362)
chr8 (30-149)||(23141614-23141733)
chr8 (37-122)||(43215532-43215617)
chr8 (64-128)||(17871248-17871312)
chr8 (66-150)||(23686608-23686692)
chr8 (3-122)||(15275957-15276076)
chr8 (3-122)||(15456326-15456445)
chr8 (97-150)||(5685876-5685929)
chr8 (7-140)||(10901390-10901523)
chr8 (69-150)||(38291220-38291301)
chr8 (66-150)||(367219-367303)
chr8 (66-150)||(45247775-45247859)
[»] chr5 (6 HSPs)
chr5 (5-140)||(38015878-38016013)
chr5 (12-102)||(19910558-19910648)
chr5 (66-123)||(38012892-38012949)
chr5 (73-140)||(9048626-9048693)
chr5 (99-144)||(15301566-15301611)
chr5 (102-138)||(33009849-33009885)
[»] chr7 (14 HSPs)
chr7 (35-144)||(42078938-42079049)
chr7 (29-113)||(4110334-4110418)
chr7 (3-122)||(38788086-38788205)
chr7 (79-150)||(6188759-6188830)
chr7 (79-150)||(6195275-6195346)
chr7 (30-117)||(6202346-6202433)
chr7 (43-120)||(17510139-17510216)
chr7 (43-120)||(17542998-17543075)
chr7 (15-116)||(24708465-24708566)
chr7 (77-150)||(24709193-24709266)
chr7 (68-120)||(17474680-17474732)
chr7 (68-120)||(17578482-17578534)
chr7 (66-121)||(22528930-22528985)
chr7 (85-139)||(43989689-43989743)
[»] scaffold0377 (1 HSPs)
scaffold0377 (35-150)||(12532-12649)
[»] scaffold0159 (2 HSPs)
scaffold0159 (60-142)||(32472-32554)
scaffold0159 (7-138)||(33194-33323)
[»] scaffold0191 (2 HSPs)
scaffold0191 (70-139)||(5918-5987)
scaffold0191 (3-93)||(12231-12321)
[»] scaffold0021 (1 HSPs)
scaffold0021 (60-134)||(128293-128367)
[»] scaffold0012 (1 HSPs)
scaffold0012 (98-144)||(95961-96007)
[»] scaffold0169 (1 HSPs)
scaffold0169 (3-128)||(5131-5256)
[»] scaffold0284 (2 HSPs)
scaffold0284 (37-144)||(6405-6512)
scaffold0284 (3-103)||(7537-7637)
[»] scaffold0216 (1 HSPs)
scaffold0216 (37-144)||(29148-29255)
[»] scaffold0061 (1 HSPs)
scaffold0061 (5-80)||(44876-44951)
[»] scaffold0051 (1 HSPs)
scaffold0051 (3-138)||(12572-12707)
[»] scaffold0036 (1 HSPs)
scaffold0036 (60-119)||(49452-49511)
[»] scaffold0017 (1 HSPs)
scaffold0017 (5-80)||(153836-153911)
[»] scaffold1315 (1 HSPs)
scaffold1315 (65-123)||(1275-1333)
[»] scaffold1293 (1 HSPs)
scaffold1293 (65-123)||(738-796)
[»] scaffold1345 (1 HSPs)
scaffold1345 (85-139)||(1855-1909)
[»] scaffold0380 (1 HSPs)
scaffold0380 (36-142)||(15262-15368)
[»] scaffold1750 (1 HSPs)
scaffold1750 (60-149)||(285-373)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 35648523 - 35648787
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  35648523 tgagattgacaccacatctttacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcttacaatgtag 35648622  T
Q  105 aagtttaactcacacatgaaacataaacatctctcccttacgtgtggggctatatatgtatgcgatctggtgagatatcacataaggtaggagacacaac 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35648623 aagtttaactcacacatgaaacataaacatctctcccttacgtgtgagactacatatgtatgcgatctggtgagatatcacataaggtaggagacacaac 35648722  T
Q  205 atggtnnnnnnnngtgggttggcgacaaatttcatagagggatgtttgcttctttctttcatgag 269  Q
    |||||        |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  35648723 atggtaaaaaaaagtgggttggcgacaaatttcatagagggatgtttacttctttctttcatgag 35648787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 150
Target Start/End: Original strand, 42756767 - 42756912
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| ||||||||||   |||| |||||| | |||||||||||  || | |  |||||||||||||||||||||| | |||||| ||||||||    
T  42756767 tgagattgacaccacatcttcatccaaaaccttaagactttaggtatatttgtcatttaacttatatgttgctcaatatatagtcttgcatccaatgtag 42756866  T
Q  105 aagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||| ||||||| |||| |||| ||||||||||||||| |||||    
T  42756867 aagttttactcacaaatgacacattaacatctctcccttaagtgtg 42756912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 5 - 144
Target Start/End: Original strand, 13239995 - 13240132
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| || ||||||||||| | |||||||||||| | ||||||||||| ||  ||||||  || |||| |||||||||||||||||||| ||| | ||    
T  13239995 tgagattgagatcacatcttcgcctaaaatcttaagactttaggtatattttttatctcgcgcatttgttactcaatatatactattgcatccaacggag 13240094  T
Q  105 aagtttaactcacacatgaaacataaacatctctccctta 144  Q
    ||||||||||  |||||| |||||||| ||||||||||||    
T  13240095 aagtttaact--cacatggaacataaatatctctccctta 13240132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 181
Target Start/End: Complemental strand, 11560337 - 11560175
Alignment:
Q  18 acatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcac 117  Q
    |||||||||| ||||| |||||| ||| | |||||||  || |||| | ||||| ||| |||||||||||| |||||| ||||||| |||||||||||||    
T  11560337 acatcttcacttaaaaccttaagacatcaagtatatttgtcatctcacgtatatattg-tcaatatatactcttgcatccaatgtataagtttaactcac 11560239  T
Q  118 acatgaaacataaacatctctcccttacgtgtggggctatatatgtatgcgatctggtgagata 181  Q
     ||||| |||| ||||||||||||||| ||||||| || | ||| | || ||| ||||||||||    
T  11560238 ccatgacacattaacatctctcccttaagtgtgggactctttatatttgtgatttggtgagata 11560175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 13909926 - 13909807
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||| |||| ||||||||||   ||||||||||| ||| ||||||||||  | |||| ||||||||||||||||||| || | |||| |  |||||    
T  13909926 aatgagattgacaccacatcttcattcaaaatcttaagacatcaggtatattggacatctcacttatatgttgctcaatatttatttttgcgtcaaatgt 13909827  T
Q  103 agaagtttaactcacacatg 122  Q
    | ||| ||||||||||||||    
T  13909826 aaaaggttaactcacacatg 13909807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 24182446 - 24182580
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| ||||||||||| | ||| |||||  ||||| |||||||  || |||| | |  ||||| ||||||||||||| |||| | ||||||||    
T  24182446 tgagattgacaccacatcttcacctgaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgctttcaatgtag 24182545  T
Q  105 aagtttaactcacacatgaaacataaacatctctc 139  Q
    |||||||||| |||||||| |||| ||||| ||||    
T  24182546 aagtttaacttacacatgacacattaacatatctc 24182580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 28474909 - 28474972
Alignment:
Q  76 ctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctc 139  Q
    ||||||||||||| |||| | ||||||||||||||||||||||||||| |||| ||||| ||||    
T  28474909 ctcaatatatacttttgctttcaatgtagaagtttaactcacacatgacacatcaacatatctc 28474972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 50158268 - 50158185
Alignment:
Q  66 ttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    ||||||||||||||| ||||||| ||||||| |||||  || ||||||||| || ||| |||| ||||||||||| ||| ||||    
T  50158268 ttatatgttgctcaacatatactcttgcataaaatgtgaaactttaactcatacttgacacattaacatctctccattaagtgt 50158185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 144
Target Start/End: Original strand, 37516433 - 37516475
Alignment:
Q  102 tagaagtttaactcacacatgaaacataaacatctctccctta 144  Q
    ||||||||||||||||||||||||||| |||||||||| ||||    
T  37516433 tagaagtttaactcacacatgaaacattaacatctctctctta 37516475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 140
Target Start/End: Complemental strand, 13228830 - 13228698
Alignment:
Q  7 agatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaa 106  Q
    |||| ||||||||| ||||||  ||||| |||||  ||||| |||||   || |||| |||||||||| ||||| || ||||||||||| ||||||   |    
T  13228830 agattgacatcacaacttcacccaaaattttaaga-attagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgtta 13228732  T
Q  107 gtttaactcacacatgaaacataaacatctctcc 140  Q
     |||||||||||| ||| |||| |||||||||||    
T  13228731 ttttaactcacacttgacacattaacatctctcc 13228698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 42729474 - 42729531
Alignment:
Q  60 tctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcac 117  Q
    |||| |||||||||| ||||| || |||||||||||||| ||| ||| ||||||||||    
T  42729474 tctcacttatatgtttctcaacatgtactattgcatacattgttgaattttaactcac 42729531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 53204135 - 53204172
Alignment:
Q  12 gacatcacatcttcacgtaaaatcttaaggcattaggt 49  Q
    ||||||||||||| |||||| |||||||||||||||||    
T  53204135 gacatcacatctttacgtaacatcttaaggcattaggt 53204172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 115
Target Start/End: Complemental strand, 316639 - 316527
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||| |||| || || ||||| | ||| |||||| |||||||||| ||| || |||  |||||||||||||||| || |||| || |||  |||||    
T  316639 aatgagattgacaccatattttcacatgaaaccttaagacattaggtattttggtcatctgacttatatgttgctcaaaatctactctttcatctaatgt 316540  T
Q  103 agaagtttaactc 115  Q
    | || ||||||||    
T  316539 ataattttaactc 316527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 24180685 - 24180741
Alignment:
Q  66 ttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatg 122  Q
    |||||||||||| ||||| |||| ||||||  |||||| ||| ||||||||||||||    
T  24180685 ttatatgttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatg 24180741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 269
Target Start/End: Original strand, 20934187 - 20934451
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  20934187 tgagattgacaccacatattcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatattattgcatacaatgtag 20934286  T
Q  105 aagtttaactcacacatgaaacataaacatctctcccttacgtgtggggctatatatgtatgcgatctggtgagatatcacataaggtaggagacacaac 204  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20934287 aagtttaagtcacacatgaaacataaacatctctcccttatgtgtgagactatatatgtatgcgatctggtgagatatcacataaggtaggagacacaac 20934386  T
Q  205 atggtnnnnnnnngtgggttggcgacaaatttcatagagggatgtttgcttctttctttcatgag 269  Q
    |||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  20934387 atggtaaaaaaaagtgggttggcgacaaatttcatagatggatgtttgcttctttctttcatgag 20934451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 10975672 - 10975777
Alignment:
Q  29 taaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacat 128  Q
    |||||||||||| |||||  | |||| ||  ||||||||||||||| |||||||||||||||||||  |||| |||||||||||||||||||||| ||||    
T  10975672 taaaatcttaagacattatatgtattttttatctcgcttatatgttactcaatatatactattgcagccaatatagaagtttaactcacacatgacacat 10975771  T
Q  129 aaacat 134  Q
    ||||||    
T  10975772 aaacat 10975777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 139
Target Start/End: Original strand, 12125483 - 12125580
Alignment:
Q  42 cattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctc 139  Q
    |||||||||||||| || |||| | |||||||||||||||||||||| ||||||  || |||||||| ||||||||  |||| |||| ||||||||||    
T  12125483 cattaggtatattggtcatctcacatatatgttgctcaatatatactcttgcatcaaaagtagaagtgtaactcactaatgacacattaacatctctc 12125580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 6087209 - 6087293
Alignment:
Q  60 tctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctccctta 144  Q
    |||| |||||||||||||   |||||||||||||||  ||||||||||||||||| | |||||| |||| |||||| ||||||||    
T  6087209 tctcacttatatgttgctagttatatactattgcatgaaatgtagaagtttaacttaaacatgacacatcaacatcgctccctta 6087293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 52753117 - 52753009
Alignment:
Q  36 ttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatc 135  Q
    ||||| |||||| | ||||  ||||| | ||||||||||| ||||||||||||||| ||| |||| || || ||||||||| |||| | |||| ||||||    
T  52753117 ttaagacattagatgtattagtcttcgcacttatatgttgttcaatatatactatttcattcaatttataattttaactcatacataatacattaacatc 52753018  T
Q  136 tctccctta 144  Q
    |||||||||    
T  52753017 tctccctta 52753009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 6436967 - 6436834
Alignment:
Q  17 cacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactca 116  Q
    ||||||||||| ||| | |||||  ||||| |||||||  || |||| | |  ||||| ||||||||||||| |||| | |||||||||||||||||| |    
T  6436967 cacatcttcacctaacaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatgtagaagtttaactta 6436868  T
Q  117 cacatgaaacataaacatctctcccttacgtgtg 150  Q
     |||||| |||| ||||| ||||  |||||||||    
T  6436867 gacatgacacattaacatatctctgttacgtgtg 6436834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 9262892 - 9262775
Alignment:
Q  17 cacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactca 116  Q
    ||||||||||| ||||| |||||  ||||| |||||||  || |||| | |  ||||| ||||||||||| | |||| | |||||||||||||||||| |    
T  9262892 cacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatatttttgcttccaatgtagaagtttaactta 9262793  T
Q  117 cacatgaaacataaacat 134  Q
    ||||||| |||| |||||    
T  9262792 cacatgacacattaacat 9262775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 9266852 - 9266733
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||| |||| ||||| ||||   |||| |||||| ||||||||||||||  | |||  |||||| |||||||||||| |||| || |||  |||||    
T  9266852 aatgagattgacaccacattttcattcaaaaccttaagacattaggtatattggacatcttacttatacgttgctcaatatttactcttacatcaaatgt 9266753  T
Q  103 agaagtttaactcacacatg 122  Q
    | ||| ||||||||||||||    
T  9266752 aaaaggttaactcacacatg 9266733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 50331915 - 50332038
Alignment:
Q  16 tcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactc 115  Q
    ||||| ||||||  ||||||||||| |||||| || ||   || |||| |||||||||| ||||| || ||||||||||| ||||||   | ||||||||    
T  50331915 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactc 50332014  T
Q  116 acacatgaaacataaacatctctc 139  Q
    |||| ||| |||| ||||||||||    
T  50332015 acacttgacacattaacatctctc 50332038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 40416420 - 40416326
Alignment:
Q  12 gacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaa 106  Q
    |||||||||||||||  |||||||||||| |||||||||||| | || ||||||||| || ||  ||||  | ||||||| ||| ||||||||||    
T  40416420 gacatcacatcttcatataaaatcttaagacattaggtatatgggtcatctcgcttaaatattattcaaactttactatttcatccaatgtagaa 40416326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 32976491 - 32976560
Alignment:
Q  80 atatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    |||| |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||| ||| ||||    
T  32976491 atatctactattgcatacaatataaaattttaactcacacttgatacattaacatctctccattaagtgt 32976560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 42400403 - 42400472
Alignment:
Q  80 atatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    |||| |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||| ||| ||||    
T  42400403 atatctactattgcatacaatataaaattttaactcacacgtgacacattaacatctctccattaagtgt 42400472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 9265385 - 9265297
Alignment:
Q  30 aaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcaca 118  Q
    |||| |||||| ||||| ||||||||  | |||| ||||||||||||| ||||| |||| ||||||  |||||| ||| ||||||||||    
T  9265385 aaaaccttaagacattaagtatattggacatctcacttatatgttgcttaatatttactcttgcatcaaatgtaaaaggttaactcaca 9265297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 20935022 - 20935086
Alignment:
Q  85 tactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||| ||| ||||    
T  20935022 tactattgcatacaatataaaattttaactcacacctgacacattaacatctctccattaagtgt 20935086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 432109 - 431974
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||||||| |||||||  ||| || ||| ||||||| ||||| | |  |||  || ||||||| ||||| ||||||| |||||| |||||| |    
T  432109 tgagatcgacatcacttcttcacccaaagtcctaaagcattagttatatggataatcttcctcatatgtttctcaacatatactcttgcatccaatgtcg 432010  T
Q  105 aagtttaactcacacatgaaacataaacatctctcc 140  Q
    || |||||||||||  ||| |||| || ||||||||    
T  432009 aattttaactcacaattgacacattaatatctctcc 431974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 133
Target Start/End: Original strand, 9611704 - 9611807
Alignment:
Q  30 aaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacata 129  Q
    |||| |||||| |||||||||||  | || |||| || | || ||||| || || ||||||||||| ||| |||||||||||| |||||||||| ||||     
T  9611704 aaaaccttaagacattaggtatacgggtcatctcactaacattttgcttaaaatctactattgcatccaacgtagaagtttaaatcacacatgacacatt 9611803  T
Q  130 aaca 133  Q
    ||||    
T  9611804 aaca 9611807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 37837482 - 37837609
Alignment:
Q  12 gacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagttta 111  Q
    ||||||||||||| ||  ||||  ||||  |||||| ||||||| || ||||  ||||||||| |||||||| |||| || ||| ||| ||| |||||||    
T  37837482 gacatcacatctttactaaaaactttaatacattagttatattggtcatctcatttatatgtttctcaatatctactttttcatccaacgtataagttta 37837581  T
Q  112 actcacacatgaaacataaacatctctc 139  Q
    | |||||||| | |||| ||||| ||||    
T  37837582 aatcacacataacacattaacatatctc 37837609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 50331814 - 50331889
Alignment:
Q  67 tatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctccct 142  Q
    ||||||||||||||||| |||| || |||| |||||| |||||||| | |||||||| |||| ||| ||| |||||    
T  50331814 tatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacattaacgtctttccct 50331889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 17764206 - 17764127
Alignment:
Q  60 tctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcc 140  Q
    |||| |||||||||||||||  ||||||| | || |||||||| ||| |||||||||||| ||  |||| |||||||||||    
T  17764206 tctcacttatatgttgctcac-atatactctggcttacaatgtggaattttaactcacacttgtcacattaacatctctcc 17764127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 19065526 - 19065447
Alignment:
Q  60 tctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcc 140  Q
    |||| |||||||||||||||  ||||||| | || |||||||| ||| |||||||||||| ||  |||| |||||||||||    
T  19065526 tctcacttatatgttgctcac-atatactctggcttacaatgtggaattttaactcacacttgtcacattaacatctctcc 19065447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 149
Target Start/End: Original strand, 25225353 - 25225417
Alignment:
Q  85 tactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    ||||||||||| |||||| ||| ||||||||||| |||| | || |||||| |||||||| ||||    
T  25225353 tactattgcattcaatgtggaactttaactcacaaatgacatattaacatccctcccttaagtgt 25225417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1312 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold1312
Description:

Target: scaffold1312; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 125 - 1
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  125 tgagattgacaccacatctttacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 26  T
Q  105 aagtttaactcacacatgaaacata 129  Q
    |||||||||||||||||||||||||    
T  25 aagtttaactcacacatgaaacata 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1782 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: scaffold1782
Description:

Target: scaffold1782; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 1360 - 1271
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgca 94  Q
    |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1360 tgagattgacaccacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgca 1271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 15 - 181
Target Start/End: Original strand, 26596686 - 26596852
Alignment:
Q  15 atcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaact 114  Q
    ||||||||||| | |||| ||||||| ||||||||||||| ||| |||||||||  |||| |||||||||| ||||||||  |||||||||||||||| |    
T  26596686 atcacatcttcgcctaaactcttaagacattaggtatatttttcatctcgcttaattgttactcaatatattctattgcagccaatgtagaagtttaagt 26596785  T
Q  115 cacacatgaaacataaacatctctcccttacgtgtggggctatatatgtatgcgatctggtgagata 181  Q
    ||||||||| |||||||||||||||||| |  |||| | ||  |||||| || ||||||||||||||    
T  26596786 cacacatgatacataaacatctctccctgaaatgtgagacttcatatgtttgtgatctggtgagata 26596852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 7 - 144
Target Start/End: Complemental strand, 24398047 - 24397911
Alignment:
Q  7 agatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaa 106  Q
    |||| |||||||| |||||||  ||||||||| | |||||| ||||||  || ||||  |||||||||||||||||||||||| | | |  |||||||||    
T  24398047 agattgacatcacctcttcacccaaaatcttacgacattagatatattagtcatctcatttatatgttgctcaatatatactaattcgtctaatgtagaa 24397948  T
Q  107 gtttaactcacacatgaaacataaacatctctccctta 144  Q
    | ||||||||||||||| |||| || ||||||| ||||    
T  24397947 g-ttaactcacacatgacacattaatatctctctctta 24397911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 34515092 - 34515224
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaagg-cattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatg 101  Q
    |||||||| ||||||||||||||||  |||| || || | ||||| |||||||| || |||| | |  ||||| ||||||||||||| |||| | |||||    
T  34515092 aatgagattgacatcacatcttcactcaaaacctgaaagacattatgtatattggtcatctcacattcatgtttctcaatatatacttttgctttcaatg 34515191  T
Q  102 tagaagtttaactcacacatgaaacataaacat 134  Q
    ||||||||||||| |||||||| |||| |||||    
T  34515192 tagaagtttaactgacacatgacacattaacat 34515224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 18089938 - 18090007
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgtt 74  Q
    |||||| |||| |||||||||||  |||| |||||||||||||||||||||||| ||||  |||||||||    
T  18089938 tgagattgacaccacatcttcacccaaaaccttaaggcattaggtatattgttcatctcaattatatgtt 18090007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 11554334 - 11554470
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||| |||| ||||| || ||  |||| |||||| ||||||||| || | || |||| || |||||||| | || |  ||||  ||||| ||||||    
T  11554334 aatgagattgacaccacattttgacccaaaaccttaagacattaggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgt 11554433  T
Q  103 agaagtttaactcacacatgaaacataaacatctctc 139  Q
    ||||| ||||||||||||||| |||| ||||||||||    
T  11554434 agaaggttaactcacacatgacacattaacatctctc 11554470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 9449570 - 9449689
Alignment:
Q  19 catcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcaca 118  Q
    ||||||||| |||||||||||||||||| | ||||   ||||||| ||||||||||  |||| |||||||  | ||| ||||||||||   |||||||||    
T  9449570 catcttcacataaaatcttaaggcattatgcatatgagtcttctcacttatatgtttttcaaaatatactcatccatccaatgtagaatggtaactcaca 9449669  T
Q  119 catgaaacataaacatctct 138  Q
    | ||| || | |||||||||    
T  9449670 cttgacacgttaacatctct 9449689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 24175141 - 24175056
Alignment:
Q  12 gacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcataca 98  Q
    ||||||||||||||||  ||| ||||||  |||||||||||  | || |||| |||||||||||||||| ||||| |||||||||||    
T  24175141 gacatcacatcttcaccaaaagtcttaaa-cattaggtataagggtcatctcacttatatgttgctcaacatatattattgcataca 24175056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 1599798 - 1599689
Alignment:
Q  30 aaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacata 129  Q
    ||||||||||| |||||| || ||   || |||| |||||||||| ||||| || ||||||||||| ||||||   | |||||||||||| ||| ||||     
T  1599798 aaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacatt 1599699  T
Q  130 aacatctctc 139  Q
    ||||||||||    
T  1599698 aacatctctc 1599689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 4852917 - 4852808
Alignment:
Q  30 aaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacata 129  Q
    ||||||||||| |||| |||| || | || |||| || |||||||| | || |  ||||  ||||| ||||||||||| ||||||||||||||| ||||     
T  4852917 aaaatcttaagacattcggtacatgggtcatctcactaatatgttgtttaacaactactcctgcatccaatgtagaaggttaactcacacatgacacatt 4852818  T
Q  130 aacatctctc 139  Q
    ||||||||||    
T  4852817 aacatctctc 4852808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 7428505 - 7428574
Alignment:
Q  80 atatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    |||| |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||| ||| ||||    
T  7428505 atatctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgt 7428574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 1599914 - 1599838
Alignment:
Q  66 ttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctccct 142  Q
    |||||||||||||||||| |||| || |||| |||||| |||||||| | |||||||| |||| ||| ||| |||||    
T  1599914 ttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacattaacgtctttccct 1599838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 24175852 - 24175742
Alignment:
Q  30 aaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacata 129  Q
    |||||||||||  |||| | |||||| |  ||||  ||||||||||||||||||||||| |||||| |||| || ||| | |||| || ||||| ||||     
T  24175852 aaaatcttaagatattatgcatattgattatctcatttatatgttgctcaatatatactcttgcatccaatataaaag-taaactaacgcatgacacatt 24175754  T
Q  130 aacatctctccc 141  Q
    ||||||||||||    
T  24175753 aacatctctccc 24175742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 28365791 - 28365722
Alignment:
Q  80 atatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    ||||||||||||||||||||| || || ||||||| |||| ||| |||| ||||||| ||| ||| ||||    
T  28365791 atatatactattgcatacaatataaaattttaacttacacttgacacattaacatctgtccattaagtgt 28365722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 21988902 - 21988818
Alignment:
Q  66 ttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||| ||| |||| ||||||| |||||| |||  ||||| |||||||||||| ||| | || ||||| ||||||||| |||||    
T  21988902 ttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgacatattaacatatctcccttaagtgtg 21988818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 27342326 - 27342194
Alignment:
Q  15 atcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgct---caatatatactattgcatacaatgtagaagttta 111  Q
    ||||||||||| | |||||||||||| | ||||||||||| ||  |||||| ||| |||| ||   |||||||||||||||||| |||||||||||||||    
T  27342326 atcacatcttcgcctaaaatcttaagactttaggtatattttttatctcgcgtatttgttactgatcaatatatactattgcatccaatgtagaagttta 27342227  T
Q  112 actcacacatgaaacataaacatctctccctta 144  Q
    ||||||||||| |||||||| ||||||||||||    
T  27342226 actcacacatggaacataaatatctctccctta 27342194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 42 - 150
Target Start/End: Original strand, 31089526 - 31089634
Alignment:
Q  42 cattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctccc 141  Q
    |||||||||||||| || ||||||||||||||||||||| ||||||| || ||| |||||||||| ||||||| ||| |||| |||| ||||| ||||||    
T  31089526 cattaggtatattgatcatctcgcttatatgttgctcaaaatatactctttcatccaatgtagaaatttaacttacatatgacacattaacatatctccc 31089625  T
Q  142 ttacgtgtg 150  Q
    ||| |||||    
T  31089626 ttaagtgtg 31089634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 16853025 - 16852891
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| ||||||||| | ||||| |||||  ||||| |||||||  || |||| | |  ||||| ||||||||||||| |||| | ||||||||    
T  16853025 tgagattgacaccacatcttcccttaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatgtag 16852926  T
Q  105 aagtttaactcacacatgaaacataaacatctctc 139  Q
    |||||||||| |||||||| |||| ||||| ||||    
T  16852925 aagtttaacttacacatgacacattaacatatctc 16852891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 139
Target Start/End: Original strand, 43387047 - 43387179
Alignment:
Q  7 agatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaa 106  Q
    |||| ||||||||| ||||||  ||||||||||| |||||| ||||    || | || |||||||||| ||||| || ||||||||||| ||||||  ||    
T  43387047 agattgacatcacaacttcacccaaaatcttaagacattagatatacgagtcatttcacttatatgtttctcaacatctactattgcattcaatgtgtaa 43387146  T
Q  107 gtttaactcacacatgaaacataaacatctctc 139  Q
     |||||||||||| ||| |||| ||||||||||    
T  43387147 ttttaactcacacttgacacattaacatctctc 43387179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 144
Target Start/End: Complemental strand, 49879193 - 49879114
Alignment:
Q  65 cttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctccctta 144  Q
    |||||| |||| ||||||||||||||| ||| |||| || || |||||||||||||||  |||| |||||||||||||||    
T  49879193 cttatacgttgttcaatatatactatttcattcaatttataattttaactcacacatggtacattaacatctctccctta 49879114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 20306753 - 20306822
Alignment:
Q  80 atatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    |||| |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||| ||| ||||    
T  20306753 atatctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgt 20306822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 65 - 138
Target Start/End: Complemental strand, 31421469 - 31421396
Alignment:
Q  65 cttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctct 138  Q
    |||||||  ||||||||||||||  |||||  |||||||| ||||||||| |||||||||| || |||||||||    
T  31421469 cttatatcctgctcaatatatacacttgcagccaatgtagtagtttaactaacacatgaaatattaacatctct 31421396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 40946585 - 40946516
Alignment:
Q  80 atatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    |||| |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||| ||| ||||    
T  40946585 atatctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgt 40946516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 85 - 149
Target Start/End: Complemental strand, 1992483 - 1992419
Alignment:
Q  85 tactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||| ||| ||||    
T  1992483 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgt 1992419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 30001762 - 30001831
Alignment:
Q  80 atatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    |||| |||||||||||||||| || || ||||||| |||| ||| |||| ||||||||||| ||| ||||    
T  30001762 atatctactattgcatacaatataaaattttaacttacacttgacacattaacatctctccattaagtgt 30001831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 15524796 - 15524712
Alignment:
Q  66 ttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||| ||| |||| ||||||| |||||| |||  ||||| |||||||||||| ||  | || ||||||||||||||| |||||    
T  15524796 ttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttggcatattaacatctctcccttaagtgtg 15524712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 43386447 - 43386527
Alignment:
Q  48 gtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacat 128  Q
    |||||||  ||||||| | ||||||||||||||||| |||| || |||| |||| ||||||| || ||| |||||| ||||    
T  43386447 gtatattagtcttctcacatatatgttgctcaatatctactctttcatataatggagaagttgaaatcaaacatgacacat 43386527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 138
Target Start/End: Complemental strand, 36720205 - 36720074
Alignment:
Q  7 agatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaa 106  Q
    |||| ||||||||||||||||  ||| |||| || |||||||||||| | || |||| |||||||||||||||| ||||| ||||||| ||| |||||||    
T  36720205 agattgacatcacatcttcacccaaagtcttcagacattaggtatatggatcatctcacttatatgttgctcaacatatattattgcacacattgtagaa 36720106  T
Q  107 gtttaactcacacatgaaacataaacatctct 138  Q
     |||||||||||| ||| |||| |||||||||    
T  36720105 ttttaactcacacttgacacattaacatctct 36720074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 45054019 - 45054155
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||| |||| ||||||||||   ||||||||||| ||| ||||||||||    |||| ||||||||||||||||||| |||| |||| |  |||||    
T  45054019 aatgagattgacaccacatcttcattcaaaatcttaagacatcaggtatattgaatatctcacttatatgttgctcaatatttacttttgcgtcaaatgt 45054118  T
Q  103 agaagtttaactcacacatgaaacataaacatctctc 139  Q
    | ||| ||||||||||||||  |||| ||| ||||||    
T  45054119 aaaaggttaactcacacatgtcacattaacttctctc 45054155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 5788099 - 5788181
Alignment:
Q  60 tctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctccct 142  Q
    |||| |||||||||||||||||||||||| || |||| ||||||||||||||| |||||| ||| |||| ||| ||| |||||    
T  5788099 tctcacttatatgttgctcaatatatactcttacatataatgtagaagtttaaatcacacgtgacacattaacgtctttccct 5788181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 3395400 - 3395533
Alignment:
Q  7 agatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaa 106  Q
    |||| ||||||||| ||||||  ||||||||||| |||||| |||||   || |||| |||||||||| ||||| || ||||||||||| ||| ||   |    
T  3395400 agattgacatcacaacttcacccaaaatcttaagacattagatatatgagtcatctcacttatatgtttctcaacatctactattgcattcaaagtgtta 3395499  T
Q  107 gtttaactcacacatgaaacataaacatctctcc 140  Q
     |||||||||||| ||| |||| |||||||||||    
T  3395500 ttttaactcacacctgacacattaacatctctcc 3395533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 139
Target Start/End: Original strand, 45058404 - 45058541
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaagg-cattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatg 101  Q
    |||||||| ||||||||||||||||  |||| || || | ||||| ||||||||  | |||| |||  ||||| ||||||||||||| |||| | |||||    
T  45058404 aatgagattgacatcacatcttcactcaaaacctgaaagacattatgtatattggccatctcactttcatgtttctcaatatatacttttgcttccaatg 45058503  T
Q  102 tagaagtttaactcacacatgaaacataaacatctctc 139  Q
    ||||||||||||  |||||||| |||| ||||| ||||    
T  45058504 tagaagtttaaccgacacatgacacatcaacatatctc 45058541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 45661211 - 45661119
Alignment:
Q  30 aaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatg 122  Q
    ||||||||||| ||||| ||||||||  | |||| ||||||||||||| ||||| |||| ||||||  |||||| ||| ||||||||||||||    
T  45661211 aaaatcttaagacattaagtatattggacatctcacttatatgttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatg 45661119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 14872856 - 14872722
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| ||||||||||| |||   |||||  ||||| |||||||  || |||| | |  ||||| ||||||||||||| |||| | ||||||||    
T  14872856 tgagattgacaccacatcttcacctaactccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatgtag 14872757  T
Q  105 aagtttaactcacacatgaaacataaacatctctc 139  Q
    |||||||||| |||||||| |||| ||||| ||||    
T  14872756 aagtttaacttacacatgacacattaacatatctc 14872722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 14869819 - 14869750
Alignment:
Q  70 atgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctc 139  Q
    ||||| ||||||||||||| |||| | |||||||||||||||||| |||||||| |||| ||||| ||||    
T  14869819 atgtttctcaatatatacttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctc 14869750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 45662681 - 45662564
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| ||||||||||   ||||||||||| ||||| ||||||||  | |||  |||||| |||||||||||| |||| || |||  ||||||     
T  45662681 tgagattgacaccacatcttcattcaaaatcttaagacattacgtatattggacatcttacttatacgttgctcaatatttactcttacatcaaatgtaa 45662582  T
Q  105 aagtttaactcacacatg 122  Q
    ||| ||||||||||||||    
T  45662581 aaggttaactcacacatg 45662564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 41753979 - 41754091
Alignment:
Q  30 aaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacata 129  Q
    |||| |||||| |||| | ||||||  || |||| ||||||||||||||||||| |||| || |||| |||||| |||||||| | |||||||| ||||     
T  41753979 aaaaccttaagacattggatatattagtcatctcacttatatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacatt 41754078  T
Q  130 aacatctctccct 142  Q
    ||| ||| |||||    
T  41754079 aacgtctttccct 41754091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 144
Target Start/End: Complemental strand, 6467051 - 6466912
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| ||||||| ||   |||| |||||| |||||| ||||||  || | ||  |||||| |||||||||||||||| ||| || ||||||||    
T  6467051 tgagattgacaccacatctccatccaaaaacttaagacattagttatatttgtcatttcatttatatcttgctcaatatatactcttggatccaatgtag 6466952  T
Q  105 aagtttaactcacacatgaaacataaacatctctccctta 144  Q
    |||||| ||||| | |||| |||| | |||||| ||||||    
T  6466951 aagttttactcataaatgacacattatcatctcaccctta 6466912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 150
Target Start/End: Complemental strand, 45659276 - 45659129
Alignment:
Q  4 atgagatggacatcacatcttcacgtaaaatcttaaggcattaggtat-attgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    ||||||| |||| ||||||||||| ||||| |||||  ||||| |||| |||  || |||| | |  ||||| ||||||||||| | |||| | |||| |    
T  45659276 atgagattgacaccacatcttcacctaaaaccttaatacattatgtattattagtcatctcacattcatgtttctcaatatatatttttgcttccaattt 45659177  T
Q  103 agaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||||||||| |||||||| |||| ||||| ||||  |||||||||    
T  45659176 agaagtttaacttacacatgacacattaacatatctctgttacgtgtg 45659129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Complemental strand, 19040763 - 19040694
Alignment:
Q  80 atatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    |||| |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||| ||| ||||    
T  19040763 atatctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccattaagtgt 19040694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 39839108 - 39839177
Alignment:
Q  80 atatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    |||| |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||| ||| ||||    
T  39839108 atatctactattgcatacaatataaaattttaactcacacttgacacattaacatctctccgttaagtgt 39839177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 5788821 - 5788950
Alignment:
Q  7 agatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaa 106  Q
    |||| ||||||||| ||||||  ||||||||||| ||||||  ||||   || |||| ||||||||||| |||| || ||||||||||| ||||||   |    
T  5788821 agattgacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 5788918  T
Q  107 gtttaactcacacatgaaacataaacatctct 138  Q
     |||||||||||  ||| |||| |||||||||    
T  5788919 ttttaactcacatttgacacattaacatctct 5788950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 181
Target Start/End: Complemental strand, 30970 - 30797
Alignment:
Q  7 agatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaa 106  Q
    |||| |||||||| |||||||  ||||||||| | |||||| ||||||  || ||||  ||||||||||||||||||||||||| |||   |||||||||    
T  30970 agattgacatcacctcttcacccaaaatcttatgacattagatatattagtcatctcatttatatgttgctcaatatatactatcgcacctaatgtagaa 30871  T
Q  107 gtttaactcacacatgaaacataaacatctctcccttacgtgtggggctatatatgtatgcgatctggtgagata 181  Q
    | ||||||||||||||| |||| || ||||||| |||| || |||| || | | |||||| ||| ||||||||||    
T  30870 g-ttaactcacacatgacacattaatatctctctcttaagtatgggactctttgtgtatgtgatttggtgagata 30797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 18431546 - 18431645
Alignment:
Q  42 cattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctccc 141  Q
    |||||||||||||| || ||||   |||||||||||||||||||||| ||||||  ||  |||||||||||||||||||||| |||| ||||||||||||    
T  18431546 cattaggtatattggtcatctcaaatatatgttgctcaatatatactcttgcatcaaaattagaagtttaactcacacatgacacattaacatctctccc 18431645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 45528312 - 45528184
Alignment:
Q  20 atcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacac 119  Q
    ||||||||  ||||||||||| |||||||||||||  || ||||  |||||||||||||||||||||||  ||||| ||| || ||| ||||||||| ||    
T  45528312 atcttcacccaaaatcttaagacattaggtatatttgtcatctcatttatatgttgctcaatatatactcgtgcatccaacgttgaaatttaactcatac 45528213  T
Q  120 atgaaacataaacatctctcccttacgtg 148  Q
    |||| |||| || ||| ||| ||||||||    
T  45528212 atgatacattaatatccctctcttacgtg 45528184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 15276766 - 15276900
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| ||||||||||| ||||| |||||  ||||| |||||||  || |||| | |  ||||| ||||||||||||| |||| | ||||||||    
T  15276766 tgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatgtag 15276865  T
Q  105 aagtttaactcacacatgaaacataaacatctctc 139  Q
    |||||||||| |||||||| |||| ||||| ||||    
T  15276866 aagtttaacttacacatgacacattaacatatctc 15276900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 15457135 - 15457269
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| |||| ||||||||||| ||||| |||||  ||||| |||||||  || |||| | |  ||||| ||||||||||||| |||| | ||||||||    
T  15457135 tgagattgacaccacatcttcacctaaaaccttaatacattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatgtag 15457234  T
Q  105 aagtttaactcacacatgaaacataaacatctctc 139  Q
    |||||||||| |||||||| |||| ||||| ||||    
T  15457235 aagtttaacttacacatgacacattaacatatctc 15457269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 16220245 - 16220360
Alignment:
Q  29 taaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacat 128  Q
    ||||| |||||| |||||| | ||||  ||||| | ||||||| ||| ||||||||||||||| ||| |||| || || ||||||| |||||||  ||||    
T  16220245 taaaagcttaagacattagatgtattagtcttcccacttatattttgttcaatatatactatttcattcaatttataattttaacttacacatggtacat 16220344  T
Q  129 aaacatctctccctta 144  Q
     |||||||||||||||    
T  16220345 taacatctctccctta 16220360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 14715326 - 14715280
Alignment:
Q  98 aatgtagaagtttaactcacacatgaaacataaacatctctccctta 144  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  14715326 aatgtagaagtttaactcacacatgaaacattaacatctctctctta 14715280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 42797242 - 42797362
Alignment:
Q  16 tcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactc 115  Q
    ||||| ||||||  ||||||||||| |||||| || ||   || |||| |||||||||| ||||| |||||||||||||| ||||||   | ||||||||    
T  42797242 tcacaacttcacccaaaatcttaagacattagatacatgagtcatctcacttatatgtttctcaacatatactattgcattcaatgtgttattttaactc 42797341  T
Q  116 acacatgaaacataaacatct 136  Q
    |||| ||| |||| |||||||    
T  42797342 acacttgacacattaacatct 42797362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 149
Target Start/End: Original strand, 23141614 - 23141733
Alignment:
Q  30 aaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacata 129  Q
    |||| |||||| |||| | ||||||  || |||| ||| ||||||||||||||| |||| || |||| |||||| |||||||| | |||||||| ||||     
T  23141614 aaaaccttaagacattggatatattagtcatctcacttgtatgttgctcaatatctactcttacatataatgtataagtttaaatgacacatgacacatt 23141713  T
Q  130 aacatctctcccttacgtgt 149  Q
    ||| ||| ||||||| ||||    
T  23141714 aacgtctttcccttaagtgt 23141733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 122
Target Start/End: Original strand, 43215532 - 43215617
Alignment:
Q  37 taaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatg 122  Q
    |||| ||||| ||||||||  | |||| ||||||||||||| ||||| |||| ||||||  |||||| ||| ||||||||||||||    
T  43215532 taagacattaagtatattggacatctcacttatatgttgcttaatatttactcttgcatcaaatgtaaaaggttaactcacacatg 43215617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 17871312 - 17871248
Alignment:
Q  64 gcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacat 128  Q
    |||||||||||||||||||| |||| || ||| ||||||| || |||||||||||| ||| ||||    
T  17871312 gcttatatgttgctcaatatttactcttacattcaatgtaaaactttaactcacacttgacacat 17871248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 23686692 - 23686608
Alignment:
Q  66 ttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||| ||| |||| ||||||| |||||| |||  ||||| |||||||||||| ||| | || ||||||||||||||| |||||    
T  23686692 ttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgacatattaacatctctcccttaagtgtg 23686608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 15275957 - 15276076
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||| |||| ||||||||||    ||| |||||| ||||||||||||||  | |||  |||||| ||||||| |||| |||| || |||  |||||    
T  15275957 aatgagattgacaccacatcttcattcgaaaccttaagacattaggtatattggacatcttacttatacgttgctcgatatttactcttacatcaaatgt 15276056  T
Q  103 agaagtttaactcacacatg 122  Q
    | ||| ||||||||||||||    
T  15276057 aaaaggttaactcacacatg 15276076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 15456326 - 15456445
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||| |||| ||||||||||    ||| |||||| ||||||||||||||  | |||  |||||| ||||||| |||| |||| || |||  |||||    
T  15456326 aatgagattgacaccacatcttcattcgaaaccttaagacattaggtatattggacatcttacttatacgttgctcgatatttactcttacatcaaatgt 15456425  T
Q  103 agaagtttaactcacacatg 122  Q
    | ||| ||||||||||||||    
T  15456426 aaaaggttaactcacacatg 15456445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 150
Target Start/End: Complemental strand, 5685929 - 5685876
Alignment:
Q  97 caatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||||||| | |||||||||||||| |||| ||||||||||| ||| |||||    
T  5685929 caatgtagaattataactcacacatgacacattaacatctctcctttaagtgtg 5685876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 140
Target Start/End: Original strand, 10901390 - 10901523
Alignment:
Q  7 agatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaa 106  Q
    |||| ||||||||| ||||||  ||||||||||  |||||| ||||    || |||| ||| |||||| ||||| || ||||||||||| ||||||   |    
T  10901390 agattgacatcacaacttcacccaaaatcttaacacattagatatacgagtcatctcacttgtatgttactcaacatctactattgcattcaatgtgtta 10901489  T
Q  107 gtttaactcacacatgaaacataaacatctctcc 140  Q
     |||||||||||  ||| |||| |||||||||||    
T  10901490 ttttaactcacatttgatacattaacatctctcc 10901523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 150
Target Start/End: Complemental strand, 38291301 - 38291220
Alignment:
Q  69 tatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||| |||||||||||||  | | | | |||||||||||||| ||||||||   |||| ||||||||||||||| |||||    
T  38291301 tatgttactcaatatatactccttcctcctatgtagaagtttaaatcacacatagcacattaacatctctcccttaagtgtg 38291220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 367303 - 367219
Alignment:
Q  66 ttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||| ||| |||| ||||||| |||||| |||  ||||| |||||||||||| ||| | || ||||| ||||||||| |||||    
T  367303 ttatattttgttcaacatatacttttgcattcaagttagaactttaactcacacttgacatattaacatatctcccttaagtgtg 367219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 45247859 - 45247775
Alignment:
Q  66 ttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||| ||| |||| | ||||| |||||| ||| |||||| |||||||||||| ||| | || || |||||||||||| |||||    
T  45247859 ttatattttgttcaacacatacttttgcattcaacgtagaactttaactcacacttgacatattaaaatctctcccttaagtgtg 45247775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 38015878 - 38016013
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtag 104  Q
    |||||| ||||||||| ||||||  ||||||||||| |||||| |||||   || |||| |||||||||||||||| || ||||||||||| ||||||      
T  38015878 tgagattgacatcacaacttcacccaaaatcttaagtcattagatatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgt 38015977  T
Q  105 aagtttaactcacacatgaaacataaacatctctcc 140  Q
     | |||||||||||| ||| |||| |||||||||||    
T  38015978 tattttaactcacacttgacacattaacatctctcc 38016013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 19910558 - 19910648
Alignment:
Q  12 gacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||||||||||  |||| |||||||| |||| ||||||   || |||| ||||||||||| ||||||| |||| |||||||||||||    
T  19910558 gacatcacatcttcatctaaagtcttaaggtattaagtatatgactcatctcacttatatgttgttcaatatctactcttgcatacaatgt 19910648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 38012892 - 38012949
Alignment:
Q  66 ttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatga 123  Q
    |||||||||||||||||| |||| || |||||||||||||||||||| | ||||||||    
T  38012892 ttatatgttgctcaatatctactcttacatacaatgtagaagtttaaatgacacatga 38012949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 140
Target Start/End: Complemental strand, 9048693 - 9048626
Alignment:
Q  73 ttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcc 140  Q
    ||||||||||| |||| |||||| | || ||||||||||||||||| || | |||| |||||||||||    
T  9048693 ttgctcaatatctacttttgcatccgatatagaagtttaactcacatataacacattaacatctctcc 9048626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 15301611 - 15301566
Alignment:
Q  99 atgtagaagtttaactcacacatgaaacataaacatctctccctta 144  Q
    |||||||||||||||||||| |||| || | |||||||||||||||    
T  15301611 atgtagaagtttaactcacatatgacacgttaacatctctccctta 15301566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 138
Target Start/End: Original strand, 33009849 - 33009885
Alignment:
Q  102 tagaagtttaactcacacatgaaacataaacatctct 138  Q
    |||||||||||||||||||||| |||| |||||||||    
T  33009849 tagaagtttaactcacacatgacacattaacatctct 33009885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 42078938 - 42079049
Alignment:
Q  35 cttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgta--gaagtttaactcacacatgaaacataaac 132  Q
    |||||| ||| || ||||||| || |||| |||| |||||||||||||| |||| ||||||  ||||||  |||||||||||||||||||| |||| |||    
T  42078938 cttaagacataagatatattgatcatctcacttacatgttgctcaatatctactcttgcatcaaatgtatagaagtttaactcacacatgacacattaac 42079037  T
Q  133 atctctccctta 144  Q
    |||||| |||||    
T  42079038 atctcttcctta 42079049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 113
Target Start/End: Original strand, 4110334 - 4110418
Alignment:
Q  29 taaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaac 113  Q
    ||||| ||||||  |||| ||| |||| || |||| |||| |||||||||||||||||||||||||| |||||||| ||||||||    
T  4110334 taaaaccttaagatattatgtaaattgatcatctcacttacatgttgctcaatatatactattgcattcaatgtagtagtttaac 4110418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 122
Target Start/End: Original strand, 38788086 - 38788205
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||| |||| ||||||||||   ||||| ||||| ||| ||||||||||  | ||||  |||||||||||||||||| |||| |||| |  |||||    
T  38788086 aatgagattgacaccacatcttcattcaaaattttaagacatcaggtatattggacatctcagttatatgttgctcaatatttacttttgcgtcaaatgt 38788185  T
Q  103 agaagtttaactcacacatg 122  Q
    | ||| ||||||||||||||    
T  38788186 aaaaggttaactcacacatg 38788205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 6188830 - 6188759
Alignment:
Q  79 aatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||||||| |||| | |||||||||||||||||| |||||||| |||| ||||| ||||  |||||||||    
T  6188830 aatatatacttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctctgttacgtgtg 6188759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 6195346 - 6195275
Alignment:
Q  79 aatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||||||| |||| | |||||||||||||||||| |||||||| |||| ||||| ||||  |||||||||    
T  6195346 aatatatacttttgcttccaatgtagaagtttaacttacacatgacacattaacatatctctgttacgtgtg 6195275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 6202433 - 6202346
Alignment:
Q  30 aaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcac 117  Q
    ||||||||||| ||||| ||||||||  | |||| ||||||||||||| ||||| |||| ||||||  |||||| ||| |||||||||    
T  6202433 aaaatcttaagacattaagtatattggacatctcacttatatgttgcttaatatttactcttgcatcaaatgtaaaaggttaactcac 6202346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 17510139 - 17510216
Alignment:
Q  43 attaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacaca 120  Q
    |||||||||||||  | |||| |  |||||||| |||||||||||| ||||||  || ||||||||||||||||||||    
T  17510139 attaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacaca 17510216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 17543075 - 17542998
Alignment:
Q  43 attaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacaca 120  Q
    |||||||||||||  | |||| |  |||||||| |||||||||||| ||||||  || ||||||||||||||||||||    
T  17543075 attaggtatattggccatctcacaaatatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacaca 17542998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 24708566 - 24708465
Alignment:
Q  15 atcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaact 114  Q
    ||||||||||||   ||| |||||| | ||||||||||||| |  | |  |||||||||||||||| ||||||| || ||||||||||| || |||||||    
T  24708566 atcacatcttcatcaaaagtcttaaagtattaggtatattggttattttacttatatgttgctcaacatatactcttacatacaatgtataattttaact 24708467  T
Q  115 ca 116  Q
    ||    
T  24708466 ca 24708465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 24709266 - 24709193
Alignment:
Q  77 tcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgtg 150  Q
    |||||||||||| ||||||  ||||||||| ||||||| |||||||| |||| ||||| | ||||||| |||||    
T  24709266 tcaatatatacttttgcatttaatgtagaaatttaacttacacatgacacattaacatatttcccttaagtgtg 24709193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 17474680 - 17474732
Alignment:
Q  68 atatgttgctcaatatatactattgcatacaatgtagaagtttaactcacaca 120  Q
    |||||||| |||||||||||| ||||||  || ||||||||||||||||||||    
T  17474680 atatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacaca 17474732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 120
Target Start/End: Complemental strand, 17578534 - 17578482
Alignment:
Q  68 atatgttgctcaatatatactattgcatacaatgtagaagtttaactcacaca 120  Q
    |||||||| |||||||||||| ||||||  || ||||||||||||||||||||    
T  17578534 atatgttgttcaatatatactcttgcatcaaaagtagaagtttaactcacaca 17578482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 22528985 - 22528930
Alignment:
Q  66 ttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacat 121  Q
    ||||||||| ||||| || |||| |||||||||||||| || ||||||||||||||    
T  22528985 ttatatgtttctcaacatttactcttgcatacaatgtaaaattttaactcacacat 22528930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 43989743 - 43989689
Alignment:
Q  85 tactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctc 139  Q
    |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||    
T  43989743 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctc 43989689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 12532 - 12649
Alignment:
Q  35 cttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgta--gaagtttaactcacacatgaaacataaac 132  Q
    |||||| ||| || ||||||| || |||| |||| |||||||||||||| |||| ||||||  ||||||  ||| |||||||||||||||| |||| |||    
T  12532 cttaagacataagatatattgatcatctcacttacatgttgctcaatatttactcttgcatctaatgtatagaaatttaactcacacatgacacattaac 12631  T
Q  133 atctctcccttacgtgtg 150  Q
    |||||| ||||| |||||    
T  12632 atctcttccttaagtgtg 12649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 32472 - 32554
Alignment:
Q  60 tctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctccct 142  Q
    |||| |||||||||||||||||||||||| || |||| ||||||||||||||| |||||| ||| |||| ||| ||| |||||    
T  32472 tctcacttatatgttgctcaatatatactcttacatataatgtagaagtttaaatcacacgtgacacattaacgtctttccct 32554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 33194 - 33323
Alignment:
Q  7 agatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaa 106  Q
    |||| ||||||||| ||||||  ||||||||||| ||||||  ||||   || |||| ||||||||||| |||| || ||||||||||| ||||||   |    
T  33194 agattgacatcacaacttcacccaaaatcttaagacattag--atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgtta 33291  T
Q  107 gtttaactcacacatgaaacataaacatctct 138  Q
     |||||||||||  ||| |||| |||||||||    
T  33292 ttttaactcacatttgacacattaacatctct 33323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 70 - 139
Target Start/End: Complemental strand, 5987 - 5918
Alignment:
Q  70 atgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctc 139  Q
    ||||| ||||||||||||| |||| | ||||||||||||||||||||||||||| |||| ||||| ||||    
T  5987 atgtttctcaatatatacttttgctttcaatgtagaagtttaactcacacatgacacatcaacatatctc 5918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 93
Target Start/End: Complemental strand, 12321 - 12231
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgc 93  Q
    |||||||| | || ||||||||||   ||||||||||| ||| ||||||||||  | |||| ||||||||||||||||||| |||| ||||    
T  12321 aatgagattgccaccacatcttcattcaaaatcttaagacatcaggtatattggacatctcacttatatgttgctcaatatctacttttgc 12231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 128293 - 128367
Alignment:
Q  60 tctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacat 134  Q
    |||| |||||||||| |||||||||||||| ||||  |||| | ||| |||||||||||||||| ||||||||||    
T  128293 tctcacttatatgttactcaatatatactactgcagccaatatggaattttaactcacacatgacacataaacat 128367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 95961 - 96007
Alignment:
Q  98 aatgtagaagtttaactcacacatgaaacataaacatctctccctta 144  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  95961 aatgtagaagtttaactcacacatgaaacattaacatctctctctta 96007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 128
Target Start/End: Complemental strand, 5256 - 5131
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    ||||| || |||| ||||| |||||  |||||  |||| |||||||||||||| ||   || ||||||||||| ||||| |||| | |||||| ||||||    
T  5256 aatgatattgacaccacatattcacccaaaatagtaagacattaggtatattggtcacttcacttatatgttgttcaatgtatattcttgcatccaatgt 5157  T
Q  103 agaagtttaactcacacatgaaacat 128  Q
    ||| ||||||||||| ||||| ||||    
T  5156 agatgtttaactcacgcatgacacat 5131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 6405 - 6512
Alignment:
Q  37 taaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatct 136  Q
    |||| |||||||||||||| || |||| ||||||||||| |||| || || | |||||| |||| | ||| |||||||||||  ||| |||| |||| ||    
T  6405 taagtcattaggtatattggtcatctcacttatatgttgttcaacatctatttttgcatccaatatggaactttaactcacatttgatacattaacacct 6504  T
Q  137 ctccctta 144  Q
    ||||||||    
T  6505 ctccctta 6512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 103
Target Start/End: Original strand, 7537 - 7637
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||| |||| |||| |||||| | ||| |||||| |||||||||| ||| || |||  |||||||||||||||| || |||| || ||| ||||||    
T  7537 aatgagattgacaccacaacttcacatgaaaccttaagacattaggtattttggtcatctaacttatatgttgctcaaaatctactcttccatccaatgt 7636  T
Q  103 a 103  Q
    |    
T  7637 a 7637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 144
Target Start/End: Original strand, 29148 - 29255
Alignment:
Q  37 taaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatct 136  Q
    |||| ||| |||||||||| || |||| ||||||||||| | || || |||| |||||| |||||| ||| |||||||||||  ||| |||| ||||| |    
T  29148 taagtcatcaggtatattgatcatctcacttatatgttgtttaacatctacttttgcatccaatgtggaactttaactcacatttgatacattaacatat 29247  T
Q  137 ctccctta 144  Q
    ||||||||    
T  29248 ctccctta 29255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 44876 - 44951
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaa 80  Q
    |||||| |||| |||||||||||  |||| | |||||||||||||||||||||| |||| ||||||| || |||||    
T  44876 tgagattgacaccacatcttcaccaaaaaccataaggcattaggtatattgttcatctcacttatatatttctcaa 44951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 12707 - 12572
Alignment:
Q  3 aatgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgt 102  Q
    |||||||| || |||| || |||||  |||||||||||| || |||||||    || |||| ||||||||||| |||| |||||||||| ||| ||||||    
T  12707 aatgagattgatatcaaatgttcacccaaaatcttaaggtatcaggtatacgtgtcatctcacttatatgttgttcaaaatatactattccatccaatgt 12608  T
Q  103 agaagtttaactcacacatgaaacataaacatctct 138  Q
    | || ||||||||| || | | |||| |||||||||    
T  12607 ataactttaactcaaacttcatacattaacatctct 12572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 49452 - 49511
Alignment:
Q  60 tctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacac 119  Q
    |||| ||||||||||||||||||| ||||||| || | ||||||||||||||| ||||||    
T  49452 tctcacttatatgttgctcaatatttactattacacataatgtagaagtttaaatcacac 49511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 153911 - 153836
Alignment:
Q  5 tgagatggacatcacatcttcacgtaaaatcttaaggcattaggtatattgttcttctcgcttatatgttgctcaa 80  Q
    |||||| |||| |||||||||||  |||| | |||||||||||||||||||||| |||| ||||||| || |||||    
T  153911 tgagattgacaccacatcttcaccaaaaaccataaggcattaggtatattgttcatctcacttatatatttctcaa 153836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1315 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1315
Description:

Target: scaffold1315; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 123
Target Start/End: Complemental strand, 1333 - 1275
Alignment:
Q  65 cttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatga 123  Q
    |||||||||||| ||||||||| | |||||| |||||||||||||| ||||||| ||||    
T  1333 cttatatgttgcacaatatatagtcttgcatccaatgtagaagttttactcacaaatga 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1293 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1293
Description:

Target: scaffold1293; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 738 - 796
Alignment:
Q  65 cttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatga 123  Q
    |||||||||||| ||||||||| | |||||| |||||||||||||| ||||||| ||||    
T  738 cttatatgttgcacaatatatagtcttgcatccaatgtagaagttttactcacaaatga 796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Complemental strand, 1909 - 1855
Alignment:
Q  85 tactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctc 139  Q
    |||||||||||||||| || || |||||||||||| ||| |||| ||||||||||    
T  1909 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctc 1855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 142
Target Start/End: Complemental strand, 15368 - 15262
Alignment:
Q  36 ttaaggcattaggtatattgttcttctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatc 135  Q
    ||||| ||||| |||||||  ||  ||| ||||||||||||||||||| ||||  | |||| |||||| |||||||| |||||| ||| |||| ||| |     
T  15368 ttaagacattaagtatattaatcagctcacttatatgttgctcaatatctactcatacatataatgtaaaagtttaaatcacacttgacacattaacgtt 15269  T
Q  136 tctccct 142  Q
    |||||||    
T  15268 tctccct 15262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 149
Target Start/End: Original strand, 285 - 373
Alignment:
Q  60 tctcgcttatatgttgctcaatatatactattgcatacaatgtagaagtttaactcacacatgaaacataaacatctctcccttacgtgt 149  Q
    ||||||||| ||||| ||||  || |||||||||||||||| || || |||||||||||| ||  |||| ||||||||||| ||| ||||    
T  285 tctcgcttaaatgtttctcac-atctactattgcatacaatataaaattttaactcacacttgccacattaacatctctccattaagtgt 373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University