View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_301 (Length: 269)
Name: NF10481A_low_301
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_301 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 10 - 223
Target Start/End: Complemental strand, 19236988 - 19236771
Alignment:
| Q |
10 |
ggtgttgattggtttggggaatgtgtgtcgaagaaggtggaggattggtctaataagttgttttggtatgataaatagttaggttccgtaatgtccaact |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
19236988 |
ggtgttgattggtttggggaatgtgtgtcgaagaaggtggaggattggtctgatacgttgttttggtatgataaatggttaggtgtcgtaacatccaact |
19236889 |
T |
|
| Q |
110 |
gatcaccacgtcggtaatgtaaatatgccgttacaaataat----ccaaagtaataggaattaggcccaacatgattccaaatagagaaacttcaatcat |
205 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
19236888 |
gatcaccacgtcggtattgtaaatatgccgttacaaataatccagccaaagtaataggaattagtcctaacttgattccaaatagagaaacttcaatcat |
19236789 |
T |
|
| Q |
206 |
ttgagtttggttgaaagg |
223 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19236788 |
ttgagtttggttgaaagg |
19236771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 103 - 269
Target Start/End: Original strand, 18054145 - 18054316
Alignment:
| Q |
103 |
tccaactgatcaccacgtcggtaatgtaaatatgccgttacaaataatcca----aagtaataggaattaggcccaacatgattccaaatagagaaactt |
198 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
18054145 |
tccaactgatcaccacgtcggtattgtaaatatgccgttacaaataatccagccaaagtaataggaattagacctaacacgattccaaatagagaaactt |
18054244 |
T |
|
| Q |
199 |
caatcatttgagtttggttgaaaggnnnnnnngt-ggggtaatatctatcattaaataggaatctatattga |
269 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
18054245 |
caatcatttgagtttggttgaaaggaaaaaaagtgggggtaatatctatccttaaataggaatctgtattga |
18054316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 103 - 269
Target Start/End: Original strand, 17652915 - 17653086
Alignment:
| Q |
103 |
tccaactgatcaccacgtcggtaatgtaaatatgccgttacaaataatcca----aagtaataggaattaggcccaacatgattccaaatagagaaactt |
198 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| || |||| |||||||||||||||||||| |
|
|
| T |
17652915 |
tccaactgatcaccacgtcggtattgtaaatatgccgttacaaataatccagccaaagtaataggaattagacctaacacgattccaaatagagaaactt |
17653014 |
T |
|
| Q |
199 |
caatcatttgagtttggttgaaaggnnnnnnngt-ggggtaatatctatcattaaataggaatctatattga |
269 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
17653015 |
caatcatttgagtttggttgaaaggaaaaaaagtgggggtaatatctatccttaaataggaatttgtattga |
17653086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 25464720 - 25464629
Alignment:
| Q |
179 |
gattccaaatagagaaacttcaatcatttgagtttggttgaaaggnnnnnnngt-ggggtaatatctatcattaaataggaatctatattga |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
25464720 |
gattccaaatagagaaacttcaatcatttgagtttggttgaaaggaaaaaaagtgggggtaatatctatccttaaataggaatctgtattga |
25464629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 7396363 - 7396443
Alignment:
| Q |
10 |
ggtgttgattggtttggggaatgtgtgtcgaagaaggtggaggattggtctaataagttgttttggtatgataaatagtta |
90 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||| ||| ||| | ||| |||||||||||||||||||| |||| |
|
|
| T |
7396363 |
ggtggtgattggtttagggaatgtgtgtcgaagaaggtgggagatgggtttgatacgttgttttggtatgataaatggtta |
7396443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 103 - 207
Target Start/End: Complemental strand, 264125 - 264017
Alignment:
| Q |
103 |
tccaactgatcaccacgtcggtaatgtaaatatgccgttacaaataatcc----aaagtaataggaattaggcccaacatgattccaaatagagaaactt |
198 |
Q |
| |
|
||||||||||| ||||| | ||| || ||||| || || || |||||||| |||||||||||||||||||| || | ||||||||||||| |||||| |
|
|
| T |
264125 |
tccaactgatccccacgcctgtattgcaaatacgcagtcacgaataatcccgctaaagtaataggaattaggcctaagacgattccaaatagaaaaactt |
264026 |
T |
|
| Q |
199 |
caatcattt |
207 |
Q |
| |
|
||||||||| |
|
|
| T |
264025 |
caatcattt |
264017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 41469314 - 41469221
Alignment:
| Q |
180 |
attccaaatagagaaacttcaatca----tttgagtttggttgaaaggnnnnnnngtggggtaatatctatcattaaataggaatctatattga |
269 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||| ||||| |||||| |
|
|
| T |
41469314 |
attccaaatagagaaacttcaatcaatcatttgagtttggttgaaaggaaaaaagtgagggtaatatctatccttaaatagaaatctgtattga |
41469221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 46908327 - 46908393
Alignment:
| Q |
19 |
tggtttggggaatgtgtgtcgaagaaggtggaggattggtctaataagttgttttggtatgataaat |
85 |
Q |
| |
|
||||||| |||| ||||||||| |||||||| |||| ||||| | | ||||||||||| |||||||| |
|
|
| T |
46908327 |
tggtttgaggaaagtgtgtcgaggaaggtgggggatgggtctgacacgttgttttggtttgataaat |
46908393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 14483792 - 14483828
Alignment:
| Q |
233 |
ggggtaatatctatcattaaataggaatctatattga |
269 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
14483792 |
ggggtaatatctatccttaaataggaatctgtattga |
14483828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University