View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_307 (Length: 267)
Name: NF10481A_low_307
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_307 |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 6 - 166
Target Start/End: Original strand, 12538627 - 12538787
Alignment:
| Q |
6 |
actatgttttgtacagatagagtttggattatataatttgaacttgtttttacaagttcatattatataatgcgaattatgttaacttacgaactttaac |
105 |
Q |
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| T |
12538627 |
actatgttttgtattgacagagtttagattatataatttgaacttgtttttacgagttcatattatataatgcgaattatgttaacttacgaactgtaac |
12538726 |
T |
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| Q |
106 |
tagtttttgaaaccacttgttgatgggtttgacacatttcaaattttataatttgaacatg |
166 |
Q |
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| T |
12538727 |
taatttttgaaaccacttgttgatgggtttgacacatttcaaattttataatttgaacatg |
12538787 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 12538836 - 12538873
Alignment:
| Q |
215 |
ttagaatgaaacatgccaatttacaattgtttagtgat |
252 |
Q |
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| T |
12538836 |
ttagaatgaaacatgacaatttacagttgtttagtgat |
12538873 |
T |
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