View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_308 (Length: 267)
Name: NF10481A_low_308
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_308 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 746201 - 746455
Alignment:
| Q |
6 |
aaaaacctagcttggaagtggtacggaaccattaacatcatagtggtgcattcatgtagagattaagacaataatttttacttgagctatagttagaaaa |
105 |
Q |
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| T |
746201 |
aaaaacctagcttggaagtggtacggaaccattaacatcatagtggtgcattcatgtagagattaagacaataatttttacttgagctatagttagaaaa |
746300 |
T |
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| Q |
106 |
gagatgtttgatctcttacaataacaactaaattatctctttttaattattgtcaatgattaaatttacaatttttaattattgttatagatctagatat |
205 |
Q |
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| T |
746301 |
gagatgtttgatctcttacaataacaactaaattatctctttttaattattgtcaatgattaaatttacaatttttaattattgttatagatctaaatat |
746400 |
T |
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| Q |
206 |
ccattttttagtggttgttcatgtagagattaatatattccggtttttcatctca |
260 |
Q |
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| T |
746401 |
ccattttttagtggttgttcatgtagagattaatatattccggtttttcttctca |
746455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 710824 - 711078
Alignment:
| Q |
6 |
aaaaacctagcttggaagtggtacggaaccattaacatcatagtggtgcattcatgtagagattaagacaataatttttacttgagctatagttagaaaa |
105 |
Q |
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| T |
710824 |
aaaaacctagcttggaagtggtacggaaccattaacatcatagtggtgcattcatgtagagattaagacaataatttttacttgagctatagttagaaaa |
710923 |
T |
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| Q |
106 |
gagatgtttgatctcttacaataacaactaaattatctctttttaattattgtcaatgattaaatttacaatttttaattattgttatagatctagatat |
205 |
Q |
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| T |
710924 |
gagatgtttgatctcttacaataacaactaaattatctctttttaattattgtcaatgattatatttacaatttttaattattgttatagatctaaatat |
711023 |
T |
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| Q |
206 |
ccattttttagtggttgttcatgtagagattaatatattccggtttttcatctca |
260 |
Q |
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| T |
711024 |
ccattttttagtggttgttcatgtagagattaatatattccggtttttcttctca |
711078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 739585 - 739331
Alignment:
| Q |
6 |
aaaaacctagcttggaagtggtacggaaccattaacatcatagtggtgcattcatgtagagattaagacaataatttttacttgagctatagttagaaaa |
105 |
Q |
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|
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| T |
739585 |
aaaaacctagcttggaagtggtacggaaccattaacatcatagtggtgcattcatgtagagattaagacaataatttttacttgagctatagttagaaaa |
739486 |
T |
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| Q |
106 |
gagatgtttgatctcttacaataacaactaaattatctctttttaattattgtcaatgattaaatttacaatttttaattattgttatagatctagatat |
205 |
Q |
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| T |
739485 |
gagatgtttgatctcttacaataacaactaaattatctctttttaattattgtcaatgattatatttacaatttttaattattgttatagatctaaatat |
739386 |
T |
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| Q |
206 |
ccattttttagtggttgttcatgtagagattaatatattccggtttttcatctca |
260 |
Q |
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| T |
739385 |
ccattttttagtggttgttcatgtagagattaatatattccggtttttcttctca |
739331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 36573180 - 36573118
Alignment:
| Q |
131 |
aactaaattatctctttttaattattgtcaatgattaaatttacaatttttaattattgttat |
193 |
Q |
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| T |
36573180 |
aactaaattgtctcgtttcaattattgtcaatgactaaattgtctctttttaattattgttat |
36573118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 171
Target Start/End: Complemental strand, 12050726 - 12050690
Alignment:
| Q |
135 |
aaattatctctttttaattattgtcaatgattaaatt |
171 |
Q |
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| T |
12050726 |
aaattatctctttttaattattgtcaaggataaaatt |
12050690 |
T |
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