View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_324 (Length: 262)
Name: NF10481A_low_324
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_324 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 20816549 - 20816289
Alignment:
| Q |
1 |
tcgagtgttgtaaaccgtctgcttagtcaatccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaa |
100 |
Q |
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| T |
20816549 |
tcgagggttataaaccttctgcttagccaatccagggtcaacaacatagactataccattgatggtcaatgaagtttctgctatgtttgttgataccaaa |
20816450 |
T |
|
| Q |
101 |
atcttccttccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20816449 |
atcttccttccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaa |
20816350 |
T |
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| Q |
201 |
ctttcacagggcccaccgtgtccccccgaattgaaacttcattggatattgttcgacatgc |
261 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| |
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| T |
20816349 |
ctttcacagggcccaccgtgtccccccgaattgcaacttcattggatattttgcgacatgc |
20816289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 38779596 - 38779821
Alignment:
| Q |
1 |
tcgagtgttgtaaaccgtctgcttagtcaatccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaa |
100 |
Q |
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||||| ||| || ||| ||||||||| |||||||| |||| |||||||||||||||||| || ||||| |||||||||||||||||||||||||||| | |
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| T |
38779596 |
tcgagggttatagaccttctgcttagcaaatccaggatcaataacatagactataccatcaattgtcaaggaagtttctgctatgtttgttgataccaca |
38779695 |
T |
|
| Q |
101 |
atcttccttccaggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaa |
200 |
Q |
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| T |
38779696 |
atcttccttccaggggggcctccctccttaactggaggtggagctggctcaaaaatcttctgttgcatagctgggggaagagtagaatataatggcacgg |
38779795 |
T |
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| Q |
201 |
ctttcacagggcccaccgtgtccccc |
226 |
Q |
| |
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||||||||||||||||| ||||||| |
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| T |
38779796 |
ctttcacagggcccacctggtccccc |
38779821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 217
Target Start/End: Original strand, 33388565 - 33388771
Alignment:
| Q |
11 |
taaaccgtctgcttagtcaatccagggtcaacaacatagactataccatcgatggtcaatgaagtttctgctatgtttgttgataccaaaatcttccttc |
110 |
Q |
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|||||| ||||||| | ||||||||||||| |||||| ||||||||||| || ||||| |||||||||||||||||||||||||||| |||||| |||| |
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| T |
33388565 |
taaaccttctgcttggcaaatccagggtcaataacatatactataccatcaatagtcaaagaagtttctgctatgtttgttgataccacaatctttcttc |
33388664 |
T |
|
| Q |
111 |
caggaaggcctccctctctaactggaggtggagctggctcaaaaatcctgtgttgcatagccgggggaagagtagaatacaacggtacaactttcacagg |
210 |
Q |
| |
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|||| ||||||||||| |||||||||| |||||||||||||||||| | || |||||||| |||||||| |||||||||| | || ||||||||||| |
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| T |
33388665 |
cagggaggcctccctccttaactggaggcggagctggctcaaaaatcttctgctgcatagctgggggaagggtagaatacagtgataacactttcacagg |
33388764 |
T |
|
| Q |
211 |
gcccacc |
217 |
Q |
| |
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||||||| |
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| T |
33388765 |
gcccacc |
33388771 |
T |
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