View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_325 (Length: 262)
Name: NF10481A_low_325
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_325 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 9215421 - 9215544
Alignment:
| Q |
1 |
attctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaaga |
100 |
Q |
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| T |
9215421 |
attctgtgagatttggaatgacatttgtggattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaaga |
9215520 |
T |
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| Q |
101 |
aactaaacttatgtttcttgtgag |
124 |
Q |
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| T |
9215521 |
aactaaacttatgtttcttgtgag |
9215544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 9215614 - 9215677
Alignment:
| Q |
194 |
gttctaaagaggtcctattcaaccgaaaagggagtgaaacatggatgtgtagatatactgatct |
257 |
Q |
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| T |
9215614 |
gttctaaagaggtcctattcaaccaaaaagggaatgaaacatggatgtgtagatatactgatct |
9215677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 118
Target Start/End: Complemental strand, 25158921 - 25158812
Alignment:
| Q |
9 |
agatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaagaaactaaac |
108 |
Q |
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| T |
25158921 |
agatttggaatgacctttgttgattataagaatggcttgaaaagataccagaagttgtctgcattgtggtttaagaattttctcaaaaaagaaactaagc |
25158822 |
T |
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| Q |
109 |
ttatgtttct |
118 |
Q |
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| T |
25158821 |
ttatgtttct |
25158812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 25253919 - 25254006
Alignment:
| Q |
4 |
ctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttct |
91 |
Q |
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| T |
25253919 |
ctgtgagatttggaatgacctttgtagattacaaaaatggtttgaaaagatatcaaaagctctcagggttgtggttcaagaattttct |
25254006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 25179090 - 25179001
Alignment:
| Q |
4 |
ctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctca |
93 |
Q |
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| T |
25179090 |
ctgtgagatttggaatgacttttatagattacaaagatggtttgaaaagatatcaaaagctttcaggattgtggttcaagaattttctca |
25179001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 25167388 - 25167300
Alignment:
| Q |
4 |
ctgtgagatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctc |
92 |
Q |
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| T |
25167388 |
ctgtgagatttggaatgacattcgtagattacaaaaatggtttgaaaagatatcaaaagctctcgggattgtggttccagaattttctc |
25167300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 30363107 - 30363156
Alignment:
| Q |
6 |
gtgagatttggaatgacctttgtagattacaagaatggtttgaaaagata |
55 |
Q |
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| T |
30363107 |
gtgaggtttggaatgaactttgtagattacaacaatgacttgaaaagata |
30363156 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 42292576 - 42292664
Alignment:
| Q |
10 |
gatttggaatgacctttgtagattacaagaatggtttgaaaagatacgagaaactttctgcattgtggttcaagaattttctcaaaaaa |
98 |
Q |
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| T |
42292576 |
gatttggcatgaattttgtggattacaaaaatggtttgaaaagacaccaaaagttgtcggcaatgtggtttacgaattttctcaaaaaa |
42292664 |
T |
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