View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_326 (Length: 261)
Name: NF10481A_low_326
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_326 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 257
Target Start/End: Complemental strand, 9131047 - 9130805
Alignment:
| Q |
15 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
114 |
Q |
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| T |
9131047 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
9130948 |
T |
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| Q |
115 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
9130947 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccg |
9130848 |
T |
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| Q |
215 |
tttaaaggggagccctcggttattctatgaatggatttgggat |
257 |
Q |
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| T |
9130847 |
cttaaaggggagcccttggttattctatgaatggagttgggat |
9130805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 15 - 261
Target Start/End: Complemental strand, 9122940 - 9122705
Alignment:
| Q |
15 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
114 |
Q |
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| T |
9122940 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
9122841 |
T |
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| Q |
115 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccg |
214 |
Q |
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| T |
9122840 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagaga-----------ttgtcgatgagatcaaagtgttatctttgaaatggagtcttagccg |
9122752 |
T |
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| Q |
215 |
tttaaaggggagccctcggttattctatgaatggatttgggatccgg |
261 |
Q |
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| T |
9122751 |
tttaaaggggagcccttggttattctatgaatggagttgagatccgg |
9122705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 31 - 257
Target Start/End: Complemental strand, 24524885 - 24524659
Alignment:
| Q |
31 |
tttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
130 |
Q |
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| T |
24524885 |
tttgtttttgcaactagaaaggttcattgctgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
24524786 |
T |
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| Q |
131 |
aaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccct |
230 |
Q |
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| T |
24524785 |
aaagatcgtcaagaatttggctagagattgtgaggatattgtggatgagatcaaggtgttatctttgaaatggagtcttacccgcttaaaggggagccct |
24524686 |
T |
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| Q |
231 |
cggttattctatgaatggatttgggat |
257 |
Q |
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| T |
24524685 |
tggttattctatgaatggagttgggat |
24524659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 230
Target Start/End: Complemental strand, 10323301 - 10323138
Alignment:
| Q |
68 |
aaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatg-aaaagatcgtcaagaatttggctagagattgtgagga |
166 |
Q |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||| |||| |
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| T |
10323301 |
aaagaggggttattggttaatttggcactccgttattttggttctttggaaggctagaaatgcgaaaaatcatcaacaatttggctagagattgtaagga |
10323202 |
T |
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| Q |
167 |
tattgtggatgagatcaaagtgttatctttgaaatggagtcttagccgtttaaaggggagccct |
230 |
Q |
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|||||||||||| ||||| |||| || | | |||| |||||| ||| |||||||||||||||| |
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| T |
10323201 |
tattgtggatgaaatcaagatgttgtcatggtaatgaagtctttgccatttaaaggggagccct |
10323138 |
T |
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