View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_331 (Length: 259)
Name: NF10481A_low_331
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_331 |
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| [»] scaffold0182 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: scaffold0182 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 28397 - 28628
Alignment:
| Q |
9 |
atcagagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctt |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28397 |
atcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctt |
28482 |
T |
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| Q |
109 |
tttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28483 |
tttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagt |
28582 |
T |
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| Q |
209 |
ttcttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28583 |
ttcttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
28628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 275507 - 275738
Alignment:
| Q |
9 |
atcagagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctt |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
275507 |
atcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctt |
275592 |
T |
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| Q |
109 |
tttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagt |
208 |
Q |
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| T |
275593 |
tttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagt |
275692 |
T |
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| Q |
209 |
ttcttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
275693 |
ttcttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
275738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 9 - 254
Target Start/End: Original strand, 26396111 - 26396343
Alignment:
| Q |
9 |
atcagagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaagaagtttgatttaagaagtttgataaaataataaattccaacctt |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
26396111 |
atcacagaacaaaaatcacaacaatcagaaatcatgttaaataataatatgttaa--------------gaagtttgataaaataataaattccaacctt |
26396196 |
T |
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| Q |
109 |
tttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattc-ttttcggtgccccttttgtttttgaatcttgaggatcaagtag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396197 |
tttcacgctaccagtagattttctctttcgacctctttcaatgccgctctttattctttttcggtgccccttttgtttttgaatcttgaggatcaagtag |
26396296 |
T |
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| Q |
208 |
tttcttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26396297 |
tttcttgtcaagcaaagtgctcttcctgctattttcttggctatttt |
26396343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 213
Target Start/End: Complemental strand, 26460430 - 26460346
Alignment:
| Q |
129 |
ttctctttcgacctctttcaatgccgctctttattcttttcggtgccccttttgtttttgaatcttgaggatcaagtagtttctt |
213 |
Q |
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||||||| |||||||| ||||| || ||||| ||||||||||| || |||||||| |||| || ||||||||||| |||||| |
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| T |
26460430 |
ttctcttacgacctctctcaatcccactcttgattcttttcggagctccttttgtgtttgctggtttaggatcaagtaatttctt |
26460346 |
T |
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