View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_332 (Length: 259)
Name: NF10481A_low_332
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_332 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 50157257 - 50157005
Alignment:
| Q |
1 |
ccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaaccgagacagtgccttggagatcataattgcttgatttcgattaaat |
100 |
Q |
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| T |
50157257 |
ccaaaacaattaagttccaacatccatgcactccgctctattatgttttgccaactgagacagtgccttggagattataattgcttgatttcgattaaat |
50157158 |
T |
|
| Q |
101 |
aattgaactcagttacagtaaaagtgacgagttttcaagttatgtatagaagacttttggataacaatgtaccagtgaatatgctgctcggcnnnnnnnc |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
50157157 |
aattgaactcagttacagtaaaagtgacgagtgttcaagttatgtatagaatacttttggataacaatgtaccagtgaatatgctgctcggcaaaaaaac |
50157058 |
T |
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| Q |
201 |
ttgtccaacatcaacttttagagtgcattcaaaccattccgaaattctaacga |
253 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50157057 |
ttgtccaacctcaacttttagagtgcattcaaaccattccgaaattctaacga |
50157005 |
T |
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