View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_336 (Length: 258)
Name: NF10481A_low_336
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_336 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 24125279 - 24125520
Alignment:
| Q |
1 |
actttcaaaataagaaaagtgaactatctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacctagactcaccccccatcgccc |
100 |
Q |
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| T |
24125279 |
actttcaaaataagaaaagtgaacactcccgggtggggttgacaaaaactaggtccttgtttccagggatagtctgacctagactcaccccccatcgccc |
24125378 |
T |
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| Q |
101 |
tactctattagctccaatataaaatcaaggccaatttccactcgtaataggtacatgatgtatgannnnnnncttcaacggaaccattttcagaaagaaa |
200 |
Q |
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| T |
24125379 |
tactctattagctccaatataaaatcaaggccaatttccactcataataggtacatgatgtatgatttttttcttcaacggaaccattttcagaaagaaa |
24125478 |
T |
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| Q |
201 |
aacaagtggaaagttgattccacatgtgtcccatagagagca |
242 |
Q |
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| T |
24125479 |
aacaagtggaaagttgattccacatgtgtcctatagagagca |
24125520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 45163287 - 45163235
Alignment:
| Q |
180 |
ggaaccattttcagaaagaaaaacaagtggaaagttgattccacatgtgtccca |
233 |
Q |
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| T |
45163287 |
ggaaccattttcagaaagaagaacaagtggaaagttgatt-cacatgtgtccca |
45163235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 45163404 - 45163326
Alignment:
| Q |
1 |
actttcaaaataagaaaagtgaactatctcaggtggggttgacaaaaactaggtccttgtttccagagatagtctgacc |
79 |
Q |
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|||||||||||||| ||||||||| || ||||||||||| ||| ||| ||||||||| || ||| |||||| ||||| |
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| T |
45163404 |
actttcaaaataagtaaagtgaacactcctaggtggggttggcaagaaccaggtccttgctttcagggatagtttgacc |
45163326 |
T |
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