View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_338 (Length: 258)
Name: NF10481A_low_338
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_338 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 8705415 - 8705652
Alignment:
| Q |
9 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8705415 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacaataaaggctttaaatgagtttatt |
8705514 |
T |
|
| Q |
109 |
tgagtttttatttattcatttaaatgagtatgacaaaacatgagtttatccaggatttaataattttcctctctgattgtctgttctgtaatttgttgtt |
208 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
8705515 |
tgagtttttatttatttatttaaatgagtatgacaaaacatgagtttatccaggatttaataattttcctctctgattggctgttctgtaatttgatgtt |
8705614 |
T |
|
| Q |
209 |
tattgggttcattgtttgaaattttgaactttgaaccc |
246 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8705615 |
tattggattcattgtttgaaattttgaactttgaaccc |
8705652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 141
Target Start/End: Complemental strand, 14372312 - 14372181
Alignment:
| Q |
9 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttacattaaaggctttaaatgagtttatt |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
14372312 |
tggtgttaaaagcagccgggtgattcatgaatatcatgataccacctttgaagat-accaggtttgttttgttacaataaaggttttaaatgagtttatt |
14372214 |
T |
|
| Q |
109 |
tgagtttttatttattcatttaaatgagtatga |
141 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |
|
|
| T |
14372213 |
tgagttattatttatttatttaaatgagtatga |
14372181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 8691135 - 8691210
Alignment:
| Q |
9 |
tggtgttaaaagcagctgggtgattcatgaatatcatgataccacctttgaagatgacaaggtttgttttgttaca |
84 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| | |||||||| | ||| || ||||||||||||||||| |
|
|
| T |
8691135 |
tggtgttaaaagcaactgggtgattcatgaatatcattctgccacctttcatgataaccaggtttgttttgttaca |
8691210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University