View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_339 (Length: 258)
Name: NF10481A_low_339
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_339 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 252
Target Start/End: Original strand, 43802354 - 43802596
Alignment:
| Q |
10 |
atgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtgccacgcgagtcaacacaagattc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43802354 |
atgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtgccacgcgagtcaacacaagattc |
43802453 |
T |
|
| Q |
110 |
tacagtgcatggttatttcataaagnnnnnnncaagaataattttgaatttatgggcaataggaagagattctgcgatctggtctaataatgctgaagaa |
209 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43802454 |
tacagtgcatggttatttcataaagaaaaaaacaagaataattttgaatttatgggcaataggaagagattctgcgatctggtctaataatgctgaagaa |
43802553 |
T |
|
| Q |
210 |
ttttttccagagagattcgtggataaaagtttagactaccgcg |
252 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43802554 |
ttttttccggagagattcgtggataaaagtttagactaccgcg |
43802596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 43812923 - 43813163
Alignment:
| Q |
10 |
atgatttgtcaaagttaagttacttggatattgtgatcatggagaccttaagattataccctccgggaccacttgtgccacgcgagtcaacacaagattc |
109 |
Q |
| |
|
||||| || |||||||||||||||| |||||||||||||||||||||||||||||||| ||| | |||||||||||||| |||||||||||| | ||| | |
|
|
| T |
43812923 |
atgatatggcaaagttaagttacttagatattgtgatcatggagaccttaagattatatcctgcaggaccacttgtgccgcgcgagtcaacagaggatgc |
43813022 |
T |
|
| Q |
110 |
tacagtgcatggttatttcataaagnnnnnnncaagaataattttgaatttatgggcaataggaagagattctgcgatctggtctaataatgctgaagaa |
209 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| ||||| ||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||| |
|
|
| T |
43813023 |
tacagttcatggttatttcataaagaaaaaaacaagagtaattgtgaatttgtgggcaataggaagagattctaagatatggtctaataatgccgaagaa |
43813122 |
T |
|
| Q |
210 |
ttttttccagagagattcgtggataaaagtttagactaccg |
250 |
Q |
| |
|
|||| |||||||||||| |||||||||| || |||||||| |
|
|
| T |
43813123 |
ttttatccagagagatttgtggataaaaacttcgactaccg |
43813163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University