View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_341 (Length: 257)

Name: NF10481A_low_341
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_341
NF10481A_low_341
[»] chr4 (6 HSPs)
chr4 (18-257)||(4122480-4122719)
chr4 (38-250)||(4319152-4319370)
chr4 (39-257)||(4346583-4346804)
chr4 (76-240)||(4132521-4132676)
chr4 (18-219)||(4362810-4363016)
chr4 (35-247)||(4337132-4337341)
[»] chr6 (13 HSPs)
chr6 (150-251)||(5177965-5178066)
chr6 (154-251)||(5279790-5279887)
chr6 (145-247)||(5126592-5126694)
chr6 (165-243)||(5065432-5065510)
chr6 (153-251)||(5688874-5688972)
chr6 (174-251)||(5242504-5242581)
chr6 (183-251)||(5253759-5253827)
chr6 (176-251)||(5100812-5100887)
chr6 (176-251)||(5135913-5135988)
chr6 (164-240)||(5098448-5098524)
chr6 (174-237)||(5427140-5427203)
chr6 (181-237)||(5283223-5283279)
chr6 (179-251)||(5346255-5346327)
[»] chr7 (1 HSPs)
chr7 (174-249)||(36212913-36212988)


Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 257
Target Start/End: Original strand, 4122480 - 4122719
Alignment:
Q  18 acatcattcatctactagagttttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcatttt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122480 acatcattcatctactagagttttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcatttt 4122579  T
Q  118 catcaccaccaacaacattcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaat 217  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4122580 cagcaccaccaacaacattcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaat 4122679  T
Q  218 gaaactgtttccaaaaacaacaacaatctccactctgtca 257  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  4122680 gaaactgtttccaaaaacaacaacaatctccactttgtca 4122719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 4319152 - 4319370
Alignment:
Q  38 ttttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcattttcatcacc------accaaca 131  Q
    |||||||||||| ||| |||||| |  ||||||| |  ||||||||||  |||||| |||| ||||||| |||||||||||||||||      | ||| |    
T  4319152 ttttcttcttttctgtttttgttcaaaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcaccgatatcaacaaga 4319251  T
Q  132 acattcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaa 231  Q
    |||||||||| ||||| ||| |||||||| | | ||||  ||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||    
T  4319252 acattcttatctggtgtatgacattgctccaatatttcgacgactggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaa 4319351  T
Q  232 aaacaacaacaatctccac 250  Q
    |||| ||||||||||||||    
T  4319352 aaacgacaacaatctccac 4319370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 39 - 257
Target Start/End: Complemental strand, 4346804 - 4346583
Alignment:
Q  39 tttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcattttcatcaccaccaacaa---cat 135  Q
    |||||||||||||||||||| |||| ||||||| ||  |||||||||  |||| | |||||||| || ||||||||||||||||||||||||||   |||    
T  4346804 tttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaatcctcttggaagagcattcattttcatcaccaccaacaataacat 4346705  T
Q  136 tcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaac 235  Q
    || ||| ||||||||  || || |||||||||||  | |||||||||||||||||||||||||||| ||||||| ||||||||| | ||||  | | |||    
T  4346704 tcatatctggtgcatcacaatggtctattttttcgtcaattggttcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccataac 4346605  T
Q  236 aacaacaatctccactctgtca 257  Q
    |||||| ||||||||| |||||    
T  4346604 aacaactatctccactttgtca 4346583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 76 - 240
Target Start/End: Original strand, 4132521 - 4132676
Alignment:
Q  76 gctctacttgcagagagaccctcttggcagcgcattcattttcatcaccaccaacaacattcttatttggtgcatggcattgctctattttttcaccgat 175  Q
    |||||||||| |||| || |||||||||||| ||||||||||||||||||| | ||    ||||     ||||||| |||||| | |  |||||||| ||    
T  4132521 gctctacttgaagagtgaacctcttggcagcacattcattttcatcaccactacca----tctt-----gtgcatgacattgccccaaattttcaccaat 4132611  T
Q  176 tggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaa 240  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  4132612 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacaacaa 4132676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 4363016 - 4362810
Alignment:
Q  18 acatcattcatct--actagagttttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcatt 115  Q
    |||||||||||||  || || |||||||||||||||||||||| |||| ||||||| ||  |||||||||  |||| ||  |||||| || |||||||||    
T  4363016 acatcattcatctccaccagtgttttcttcttttttgtctttgattagaatcatctgtggactctacttgaggagaaacaatcttggaagagcattcatt 4362917  T
Q  116 ttcatcaccaccaac---aacattcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatc 212  Q
    |||||||||||||||   ||||||| ||| | | | ||  || || || |||||| |  | |||||||||||||||||||||||||||| ||||||| ||    
T  4362916 ttcatcaccaccaacaataacattcgtatcttgggaatcacagtggtccatttttccgtcaattggttcatcatatatgagataaactgctgtcttcgtc 4362817  T
Q  213 acaatga 219  Q
    |||||||    
T  4362816 acaatga 4362810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 247
Target Start/End: Complemental strand, 4337341 - 4337132
Alignment:
Q  35 gagttttcttcttttttgtctttgtttagtatcatctatgtgctctacttgcagagagaccctcttggcagcgcattcattttcatcaccac---caac- 130  Q
    ||||||||||||||| ||| |||||||   |||||||    |||||||||| ||||||| |||||||||||| |||||||||| ||||||||   ||||     
T  4337341 gagttttcttcttttctgtttttgttttaaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacg 4337242  T
Q  131 --aacattcttatttggtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttc 228  Q
      |||||||| || ||||||||| |||||||| | ||||||          |||| ||||||||||||||||| |||| ||||||||||  ||||||| |    
T  4337241 agaacattctcatctggtgcatgacattgctcaaatttttcg---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcc 4337151  T
Q  229 caaaaacaacaacaatctc 247  Q
    |||||||||||||||||||    
T  4337150 caaaaacaacaacaatctc 4337132  T

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Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 251
Target Start/End: Complemental strand, 5178066 - 5177965
Alignment:
Q  150 tggcattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctcca 249  Q
    ||||||||||| |||||||| || |||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  ||||||||||||||| |||||    
T  5178066 tggcattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctcca 5177967  T
Q  250 ct 251  Q
    ||    
T  5177966 ct 5177965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 5279887 - 5279790
Alignment:
Q  154 attgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccact 251  Q
    ||||||| |||||||| || |||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  ||||||||||||||| |||||||    
T  5279887 attgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccact 5279790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 5126592 - 5126694
Alignment:
Q  145 gtgcatggcattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaat 244  Q
    ||||||| |||||||  ||  ||||||| |||||||||||||||||||||||||| | ||||||| |||||||||||| |||   |||||||||||||||    
T  5126592 gtgcatgacattgcttcatagtttcaccaattggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaat 5126691  T
Q  245 ctc 247  Q
    |||    
T  5126692 ctc 5126694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 243
Target Start/End: Original strand, 5065432 - 5065510
Alignment:
Q  165 ttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaa 243  Q
    |||||| | |||||||||||||||||||||||||||| |||| || |||||| ||||| |||  |||||||||||||||    
T  5065432 ttttcagcaattggttcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaa 5065510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 251
Target Start/End: Original strand, 5688874 - 5688972
Alignment:
Q  153 cattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccact 251  Q
    |||||||| || |||||||  |||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  ||||||||  ||||| |||||||    
T  5688874 cattgctccatattttcacgaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccact 5688972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 5242504 - 5242581
Alignment:
Q  174 attggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccact 251  Q
    |||||||||||||||| ||||||||||  ||||||| ||||||||||||||||  ||||||||| ||| | |||||||    
T  5242504 attggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccact 5242581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 5253827 - 5253759
Alignment:
Q  183 tcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccact 251  Q
    |||||||||||||||||||  ||| || ||||||||||||||||  ||||||||||||||| |||||||    
T  5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccact 5253759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 5100812 - 5100887
Alignment:
Q  176 tggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccact 251  Q
    ||||||||| |||| ||||||||||| ||||||  ||||||||||||||||  ||||||||||||| | |||||||    
T  5100812 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccact 5100887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 176 - 251
Target Start/End: Original strand, 5135913 - 5135988
Alignment:
Q  176 tggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccact 251  Q
    ||||||||| |||| ||||||||||| ||||||  ||||||||||||||||  ||||||||||||| | |||||||    
T  5135913 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccact 5135988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 240
Target Start/End: Complemental strand, 5098524 - 5098448
Alignment:
Q  164 tttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaa 240  Q
    ||||||||| ||| ||||||||||||  |||||||||| ||||||  ||||||||||||||||  | ||||||||||    
T  5098524 tttttcaccaatttgttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaa 5098448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 5427203 - 5427140
Alignment:
Q  174 attggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaa 237  Q
    |||||||||||||||| ||||||||||  ||||||| |||||| |||||||||  |||||||||    
T  5427203 attggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaa 5427140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 237
Target Start/End: Original strand, 5283223 - 5283279
Alignment:
Q  181 catcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaa 237  Q
    |||||||||  ||||||| || ||||||| ||||||||||||||||| |||||||||    
T  5283223 catcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaa 5283279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 251
Target Start/End: Complemental strand, 5346327 - 5346255
Alignment:
Q  179 ttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccact 251  Q
    |||||||||||||||||||| || ||||||| ||||||||||||  ||  ||| |||||| |||| |||||||    
T  5346327 ttcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccact 5346255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 249
Target Start/End: Original strand, 36212913 - 36212988
Alignment:
Q  174 attggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctcca 249  Q
    |||||||||||||| ||||||||||  | ||||||| ||||||||||| ||||  ||||||||||||||| |||||    
T  36212913 attggttcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctcca 36212988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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