View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_344 (Length: 256)

Name: NF10481A_low_344
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_344
NF10481A_low_344
[»] chr8 (2 HSPs)
chr8 (4-253)||(2906168-2906417)
chr8 (4-253)||(2854140-2854389)


Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 2906168 - 2906417
Alignment:
Q  4 atcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccacca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  2906168 atcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacacgacgctctccaccgccgcca 2906267  T
Q  104 ccaataggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattac 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2906268 ccaacaggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattac 2906367  T
Q  204 cataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2906368 cataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg 2906417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 2854140 - 2854389
Alignment:
Q  4 atcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccacctccacaactgtgccgaattgaacgcgacgctctccaccgccacca 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||  |||||||||||    
T  2854140 atcatcattatggtggtgttcttcctcgctgccgccaccaaattcatctcccatctccacaactgtgccaaattgaacccgacactcctcaccgccacca 2854239  T
Q  104 ccaataggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattac 203  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2854240 ccaacaggggaatgagaaggggattttgtaccacgagggcttctaacagcagtagcagctgtttgtggagattttggtgtccaaattgcaccagtattac 2854339  T
Q  204 cataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2854340 cataattgtttgtatgatgttcatcaaattgaacattaataggtctaatg 2854389  T

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