View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_345 (Length: 256)
Name: NF10481A_low_345
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_345 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 256
Target Start/End: Original strand, 52242378 - 52242627
Alignment:
| Q |
7 |
tttggtgttgaacacccacttggagtttgagactgtgaatcttctcctccaaatatatcatcaaagaaatcttttccttctcttctcctcctaactccac |
106 |
Q |
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| T |
52242378 |
tttggtgttgaacacccacttggagtttgagactgtgaatcttctcctccaaatatatcatcaaaaaaatcttttccttttcttctcctcctagctccac |
52242477 |
T |
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| Q |
107 |
tatcctcaccaaacaccggtttctcgctctcaggcggaggaggccaactacaccaacccgtttcaccttcctctcctccactcaccgatgacctcctccg |
206 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52242478 |
tatcctcaccaaacactggtttctcgctctcaggcggaggaggccaactacaccaacccgtttcaccttcctctcctccactcaccgatgacctcctccg |
52242577 |
T |
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| Q |
207 |
cggcggtcccccaaacacatcattaaaatcaacgtctgatttcctctgtg |
256 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52242578 |
cggtggtcccccaaacacatcattaaaatcaacgtctgatttcctctgtg |
52242627 |
T |
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