View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_35 (Length: 434)
Name: NF10481A_low_35
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_35 |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Complemental strand, 27096850 - 27096426
Alignment:
| Q |
6 |
caatgagtggatcaaattctttcataatataaaatcgtttttcaaatctctattaaaatagatgtccacatttagtttcgaaggtgattgcttttaataa |
105 |
Q |
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| T |
27096850 |
caatgagtggatctaattctttcataatatagaatcgtttttcaaatctctattaaaatagatgtccacatttagtttcgaaggtgattgcttttaataa |
27096751 |
T |
|
| Q |
106 |
aaggacnnnnnnnnnnaaaagactaaaaatatatcgacagatttcacccggtatgaggtatgcataaaagagaagatggaacaagattataaataggatc |
205 |
Q |
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| T |
27096750 |
aaggacttttttttttaaaagactaaaaatatatcgacacatttcacccggtatgaggtatgcacaaaagagaagatggaataagattataaataggatc |
27096651 |
T |
|
| Q |
206 |
attcattacgttagagtttgaactccagatttttcacttatttattttaaaggtgaatttttaactattagactacttaacacgcaaaaatttcacaaaa |
305 |
Q |
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| T |
27096650 |
attcattacgttagagtttgaactccagatttttcacttatttattttaaaggtgaatttttaactattagactacttaacacgcaaaaatttcacaaaa |
27096551 |
T |
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| Q |
306 |
acgaaagtggaacaagattacataggatcacatggttacctaatgccaatttcaatgtgaaactccccacaaaacatatacaactaactgcaccacacac |
405 |
Q |
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| T |
27096550 |
acgaaagtggaacaagattacataggatcacatggttacctaatgccaatttcaatgtgaaactccccacaaaacatatacaactaactgcaccacacac |
27096451 |
T |
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| Q |
406 |
ccaagaggccaagaccataacaatt |
430 |
Q |
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| T |
27096450 |
ccaagaggccaagaccataacaatt |
27096426 |
T |
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Back To:
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 4930532 - 4930484
Alignment:
| Q |
219 |
gagtttgaactccagatttttcacttatttattttaaaggtgaattttt |
267 |
Q |
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| T |
4930532 |
gagtttgaacttcatattattcacttatttattttaagggtgaattttt |
4930484 |
T |
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