View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_353 (Length: 254)
Name: NF10481A_low_353
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_353 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 234
Target Start/End: Original strand, 26099226 - 26099449
Alignment:
| Q |
12 |
tgttcatggccatggccttccgttacgggagtgaggaggagtttggcaaa-acttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgc |
110 |
Q |
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||||| ||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26099226 |
tgttcgtggccatggccatccattacgggagtgaggagcagtttggcaaagacttcatctgtgtgaggatcaacaaggagatcaacggctgagatgatgc |
26099325 |
T |
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| Q |
111 |
aggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgagttgagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26099326 |
aggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgaggggagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtag |
26099425 |
T |
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| Q |
211 |
cttcggaatcttgactgaggctcc |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
26099426 |
cttcggaatcttgactgaggctcc |
26099449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 25224863 - 25224814
Alignment:
| Q |
176 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
225 |
Q |
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| T |
25224863 |
tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac |
25224814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 25289019 - 25288970
Alignment:
| Q |
176 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
225 |
Q |
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| T |
25289019 |
tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac |
25288970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 25728385 - 25728434
Alignment:
| Q |
176 |
tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac |
225 |
Q |
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| T |
25728385 |
tgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgac |
25728434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 25225016 - 25224928
Alignment:
| Q |
33 |
gttacgggagtgaggaggagtttggcaaa-acttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
120 |
Q |
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| T |
25225016 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25224928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 25289172 - 25289084
Alignment:
| Q |
33 |
gttacgggagtgaggaggagtttggcaaa-acttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
120 |
Q |
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| T |
25289172 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25289084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 120
Target Start/End: Original strand, 25728232 - 25728320
Alignment:
| Q |
33 |
gttacgggagtgaggaggagtttggcaaa-acttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
120 |
Q |
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||||||||||| ||||| ||||||||||| || || || | |||||||||||||| ||||||||||| |||| |||||| | |||||| |
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| T |
25728232 |
gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga |
25728320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 120
Target Start/End: Complemental strand, 25618132 - 25618044
Alignment:
| Q |
33 |
gttacgggagtgaggaggagtttggcaaa-acttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga |
120 |
Q |
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||||||||||||||||| |||||||| || |||||||| | || ||||||| |||||||||| |||| ||||||||||| | |||||| |
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| T |
25618132 |
gttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatcagcaaggagatcgacggtggagatgatgcacggaatgga |
25618044 |
T |
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