View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10481A_low_358 (Length: 251)
Name: NF10481A_low_358
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_358 |
 | |
|
| [»] scaffold0232 (2 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0464 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14962954 - 14963197
Alignment:
| Q |
1 |
ttgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
14962954 |
ttgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatatttgacattatcactgtcaaaatttgttgatggtctgttttattt |
14963053 |
T |
|
| Q |
101 |
acttgtttcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14963054 |
acttgtttcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
14963153 |
T |
|
| Q |
201 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14963154 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
14963197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 63 - 162
Target Start/End: Original strand, 17006621 - 17006720
Alignment:
| Q |
63 |
ttatcactgtcaaagtttgttgatggtctgttttatttacttgtttcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaa |
162 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
17006621 |
ttatcactgtcaaagtttgttgatgttctgttttatttagttgtttcatgaactgttgtatatgcatgaattattgcaagttgaaatgcaaaacactcaa |
17006720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 23 - 244
Target Start/End: Original strand, 18802347 - 18802568
Alignment:
| Q |
23 |
tgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtttcatgaactgttgta |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18802347 |
tgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatgttctgttttatttacttgtttcatgaactgttgta |
18802446 |
T |
|
| Q |
123 |
tatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttct |
222 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18802447 |
tatgcgggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttct |
18802546 |
T |
|
| Q |
223 |
atggggcttgggataacaccat |
244 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
18802547 |
atggggcttgggataacaccat |
18802568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 15333386 - 15333636
Alignment:
| Q |
1 |
ttgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
15333386 |
ttgcctaaagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgttgatgttctgttttattt |
15333485 |
T |
|
| Q |
101 |
acttgtttcatgaactgtt-------gtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttg |
193 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15333486 |
aattgtttcatgaactgttgtatgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttg |
15333585 |
T |
|
| Q |
194 |
gaaaggaacatgctggatatgtccgttctatggggcttgggataacaccat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15333586 |
gaaaggaacatgctggatatgtccgttctatggggcttgggataacaccat |
15333636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 15513755 - 15514005
Alignment:
| Q |
1 |
ttgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
15513755 |
ttgcctaaagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgttgatgttctgttttattt |
15513854 |
T |
|
| Q |
101 |
acttgtttcatgaactgtt-------gtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttg |
193 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15513855 |
aattgtttcatgaactgttgtatgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttg |
15513954 |
T |
|
| Q |
194 |
gaaaggaacatgctggatatgtccgttctatggggcttgggataacaccat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15513955 |
gaaaggaacatgctggatatgtccgttctatggggcttgggataacaccat |
15514005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 15422482 - 15422732
Alignment:
| Q |
1 |
ttgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
15422482 |
ttgcctaaagaggtcataacattgaaagtttatattttatttaatttatgaaatgtttgacattatcactgtcaaaatttgttgatgttatgttttattt |
15422581 |
T |
|
| Q |
101 |
acttgtttcatgaactgtt-------gtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttg |
193 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15422582 |
aattgtttcatgaactgttgtatgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttg |
15422681 |
T |
|
| Q |
194 |
gaaaggaacatgctggatatgtccgttctatggggcttgggataacaccat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15422682 |
gaaaggaacatgctggatatgtccgttctatggggcttgggataacaccat |
15422732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 14980541 - 14980298
Alignment:
| Q |
1 |
ttgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
14980541 |
ttgcctaaagaggtcataacattgaaagcttatgtttcgtttaatttatgaaatgcttcacattatcactgtcaaagtttgttgatgttctgttttatat |
14980442 |
T |
|
| Q |
101 |
acttgtttcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
200 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14980441 |
agttgtttcatgaactgttgtatatgcaagaactattgcatgttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
14980342 |
T |
|
| Q |
201 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
244 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14980341 |
acatgatggatatgtccgttctatggggcttgggataacaccat |
14980298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 20464003 - 20463907
Alignment:
| Q |
121 |
tatatgcaggaactattgcaagttgaaatgcaaaaca-ctcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtc |
216 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| || |||||| |||||||||||||||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
20464003 |
tatatgcaggaacaattgcaagctgaaatgcaaaccaactcaatttgagaatgaagcatttgtcaaagggtttggaaagggacatgctggatatgtc |
20463907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 48630660 - 48630901
Alignment:
| Q |
1 |
ttgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
48630660 |
ttgcctaaagaggtcataacattgaaagttt--gttttgtttaatttatgaaatgcttgacattatcactgtcaaagtttgtttatgttctattttattt |
48630757 |
T |
|
| Q |
101 |
acttgtttcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48630758 |
agttgtttcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacacttaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
48630857 |
T |
|
| Q |
201 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48630858 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
48630901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 21301758 - 21301515
Alignment:
| Q |
1 |
ttgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttattt |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||| || |
|
|
| T |
21301758 |
ttgcctaaagtggtcataacgttgaaagtttatgttttgtttaatttatgaaatgcttgacattatcactatcaaagtttgttgatgttctgttttagtt |
21301659 |
T |
|
| Q |
101 |
acttgtttcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaagga |
200 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21301658 |
agttgtttcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttgaaaagga |
21301559 |
T |
|
| Q |
201 |
acatgctggatatgtccgttctatggggcttgggataacaccat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
21301558 |
acatgctggatatgtccgttctatggggcttgggataactccat |
21301515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 5404737 - 5404808
Alignment:
| Q |
26 |
aagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgtttta |
97 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
5404737 |
aagtttatgttttgtttaatttatgaaatgcctgacattatcactgttaaagtttgttgatgttctatttta |
5404808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 13 - 244
Target Start/End: Original strand, 4103645 - 4103875
Alignment:
| Q |
13 |
gtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttatttacttgtttcatg |
112 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||| || | |||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
4103645 |
gtcataacattgaaagtttatgttttgtttaatttatgaaatgcttcatattatcactgtcaaagtttgttgatgttctgttttatttagttgtttcatg |
4103744 |
T |
|
| Q |
113 |
aactgttgtatatgcaggaact-attgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggat |
211 |
Q |
| |
|
|||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
4103745 |
aactgttgtatatgcatgaactaattgcaagttgaaatgcaaaacactc--tgtgagaatgaagcatttttcaaagtgtttggaaaggagcatgttggat |
4103842 |
T |
|
| Q |
212 |
atgtccgttctatggggcttgggataacaccat |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4103843 |
atgtccgttctatggggcttgggataacaccat |
4103875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 35184493 - 35184666
Alignment:
| Q |
1 |
ttgcctaaagaggtcataacattgaaagtttatgttttatttaatttatgaaatgtttgacattatcactgtcaaagtttgttgatggtctgttttattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |||||| ||||| |
|
|
| T |
35184493 |
ttgcctaaagaggtcataacattgaaagtttatgttttgtttaatttatgaaatgcttgacattatcacggtcaaagtttgttgatgttctgttctattt |
35184592 |
T |
|
| Q |
101 |
acttgtttcatgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaa |
174 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
35184593 |
agttgtttcatgaactgttgtatatgcaggaactattgcaagctgaaattcaaaacactcaatgtgagaatgaa |
35184666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 244
Target Start/End: Original strand, 47914706 - 47914825
Alignment:
| Q |
122 |
atatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttc |
221 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
47914706 |
atatgcaggaacaattgcaaattgaaatgcaaaacactcc---tgagaatgaagcatttgtcaaagtgtttggaaaagaacatcctggatatgtgcgttc |
47914802 |
T |
|
| Q |
222 |
tatggggcttgggataacaccat |
244 |
Q |
| |
|
|||||| ||||||||| |||||| |
|
|
| T |
47914803 |
tatgggacttgggataccaccat |
47914825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 3498855 - 3498724
Alignment:
| Q |
110 |
atgaactgttgtatatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctgg |
209 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| ||||||| ||| |||||||| |||||||| | ||||| |||||||||| ||| | ||||| ||| |
|
|
| T |
3498855 |
atgaattgttgtatatgcaggaacaattgcaagctgaaatggaaaccactcaatttgagaatggatcatttgtcaaagtgttcgga---ggacatgttgg |
3498759 |
T |
|
| Q |
210 |
atatgtccgttctatggggcttgggataacaccat |
244 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||||| |
|
|
| T |
3498758 |
atatgtccgttccatgggacttgggataacaccat |
3498724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 35184664 - 35184709
Alignment:
| Q |
199 |
gaacatgctggatatgtccgttctatggggcttgggataacaccat |
244 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35184664 |
gaacatgttggatatgtccgttctatggggcttgggataacaccat |
35184709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 2468924 - 2468968
Alignment:
| Q |
26 |
aagtttatgttttatttaatttatgaaatgtttgacattatcact |
70 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
2468924 |
aagtttatgttttgtttaatttatgaaatgcttgacattatcact |
2468968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0232
Description:
Target: scaffold0232; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 244
Target Start/End: Original strand, 21063 - 21182
Alignment:
| Q |
122 |
atatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttc |
221 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
21063 |
atatgcaggaacaattgcaaattgaaatgcaaaacactcc---tgagaatgaagcatttgtcaaagtgtttggaaaagaacatcctggatatgtgcgttc |
21159 |
T |
|
| Q |
222 |
tatggggcttgggataacaccat |
244 |
Q |
| |
|
|||||| ||||||||| |||||| |
|
|
| T |
21160 |
tatgggacttgggataccaccat |
21182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0232; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 244
Target Start/End: Original strand, 26146 - 26265
Alignment:
| Q |
122 |
atatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttc |
221 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
26146 |
atatgcaggaacaattgcaaattgaaatgcaaaacactcc---tgagaatgaagcatttgtcaaagtgtttggaaaagaacatcctggatatgtgcgttc |
26242 |
T |
|
| Q |
222 |
tatggggcttgggataacaccat |
244 |
Q |
| |
|
|||||| ||||||||| |||||| |
|
|
| T |
26243 |
tatgggacttgggataccaccat |
26265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 122 - 244
Target Start/End: Original strand, 7190494 - 7190613
Alignment:
| Q |
122 |
atatgcaggaactattgcaagttgaaatgcaaaacactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtccgttc |
221 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||| |||||||||| ||||| |
|
|
| T |
7190494 |
atatgcaggaacaattgcaaattgaaatgcaaaacactcc---tgagaatgaagcatttgtcaaagtgtttggaaaagaacatcctggatatgtgcgttc |
7190590 |
T |
|
| Q |
222 |
tatggggcttgggataacaccat |
244 |
Q |
| |
|
|||||| ||||||||| |||||| |
|
|
| T |
7190591 |
tatgggacttgggataccaccat |
7190613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 216
Target Start/End: Complemental strand, 112175 - 112079
Alignment:
| Q |
121 |
tatatgcaggaactattgcaagttgaaatgcaaaaca-ctcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtc |
216 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| || |||||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
112175 |
tatatgcaggaacaattgcaagctgaaatgcaaaccaactcaatttgagaatgaagcatttgtcaaagggtttggaaagggacatgttggatatgtc |
112079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 121 - 216
Target Start/End: Original strand, 9326359 - 9326455
Alignment:
| Q |
121 |
tatatgcaggaactattgcaagttgaaatgcaaa-acactcaatgtgagaatgaagcatttttcaaagtgtttggaaaggaacatgctggatatgtc |
216 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| | ||||||| |||||||||||||||| |||||| ||||||||||| ||||| |||||||||| |
|
|
| T |
9326359 |
tatatgcaggaacaattgcaagctgaaatgcaaacaaactcaatttgagaatgaagcatttgtcaaagggtttggaaagggacatgttggatatgtc |
9326455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0464 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0464
Description:
Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 3313 - 3347
Alignment:
| Q |
1 |
ttgcctaaagaggtcataacattgaaagtttatgt |
35 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
3313 |
ttgcgtaaagaggtcataacattgaaagtttatgt |
3347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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