View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_36 (Length: 431)
Name: NF10481A_low_36
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_36 |
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| [»] scaffold1051 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 34 - 402
Target Start/End: Complemental strand, 41311395 - 41311027
Alignment:
| Q |
34 |
ataaaaatacatggtatctagttcaattgacttggagatgttctcattgaggggtaatcaatgggaacaaattgagtttgattctgatttgccttatgag |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41311395 |
ataaaaatacatggtatctagttcaattgacttggagattttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataag |
41311296 |
T |
|
| Q |
134 |
aatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttatta |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41311295 |
aatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttatta |
41311196 |
T |
|
| Q |
234 |
ttgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttgg |
333 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311195 |
ttgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttgg |
41311096 |
T |
|
| Q |
334 |
cagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
402 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41311095 |
cagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 45 - 397
Target Start/End: Complemental strand, 43165062 - 43164710
Alignment:
| Q |
45 |
tggtatctagttcaattgacttggagatgttctcattgaggggtaatcaatgggaacaaattgagtttgattctgatttgccttatgagaatactgcaag |
144 |
Q |
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||||||||||||| |||||||||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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|
| T |
43165062 |
tggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaag |
43164963 |
T |
|
| Q |
145 |
ctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgat |
244 |
Q |
| |
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|| | |||| ||||||||| ||||||||||||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||| |
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| T |
43164962 |
acctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgat |
43164863 |
T |
|
| Q |
245 |
ttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttatta |
344 |
Q |
| |
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|||||||||| |||| ||||||||| |||||| ||||||| |||||||||||||| ||| | | ||||||||||| ||||| || || ||||||| | |
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| T |
43164862 |
ttaaaggaaaagacaatgtcagagattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatca |
43164763 |
T |
|
| Q |
345 |
gtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
397 |
Q |
| |
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| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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|
| T |
43164762 |
gcgtatggaatatggagatgtctacacttaagatatgggtaatgcaagaatac |
43164710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 110 - 397
Target Start/End: Original strand, 30165608 - 30165883
Alignment:
| Q |
110 |
tttgattctgatttgccttatgagaatactgcaagctctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatg |
209 |
Q |
| |
|
||||||||| ||||||||||| ||| ||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||| ||||| || |
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| T |
30165608 |
tttgattctcatttgccttataggaaccctgcatgctctgaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataatt |
30165707 |
T |
|
| Q |
210 |
ataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatggtttttatagtgattactctactag |
309 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| ||||| ||| ||| || || | ||| | |
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| T |
30165708 |
atcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcagagatagctcttccaaatgattgttctcgtg------------g |
30165795 |
T |
|
| Q |
310 |
aatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacacttaagatatgggtgatgcaagaatac |
397 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||||| |||||| | ||||| |||||||||||||||||||||||||| |
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|
| T |
30165796 |
aatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtctacagttaagatatgggtgatgcaagaatac |
30165883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 55 - 402
Target Start/End: Complemental strand, 30125328 - 30124981
Alignment:
| Q |
55 |
ttcaattgacttggagatgttctcattgaggggtaatcaatgggaacaaattgagtttgattctgatttgccttatgagaatactgcaagctctaatggt |
154 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| | |||| | ||||| ||||||||||||||||| ||||||||||| ||||||||| ||||||| || |
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|
| T |
30125328 |
ttcaattgacttggagattttcccattgagagctaataagtgggaggaaattgagtttgattctcatttgccttataggaatactgctcgctctaacgga |
30125229 |
T |
|
| Q |
155 |
ggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaa |
254 |
Q |
| |
|
| ||||||||||||| |||||||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |
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| T |
30125228 |
tggcccagagttgggttgttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaag |
30125129 |
T |
|
| Q |
255 |
tgacactgtcagagactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaa |
354 |
Q |
| |
|
|||| ||||||| | ||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| |
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|
| T |
30125128 |
cgacaatgtcagaaatagctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggat |
30125029 |
T |
|
| Q |
355 |
tatggagatgcctacacttaagatatgggtgatgcaagaatacacaat |
402 |
Q |
| |
|
| | |||||| | || |||||||| |||||||||| |||||| |||| |
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|
| T |
30125028 |
tcttgagatggatgcagttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 184 - 299
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
184 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
283 |
Q |
| |
|
|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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|
| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
284 |
ggtttttatagtgatt |
299 |
Q |
| |
|
| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 30131178 - 30131068
Alignment:
| Q |
159 |
ccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgac |
258 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| |||||||||||||||| |
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|
| T |
30131178 |
ccagagtcgggttgttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgac |
30131079 |
T |
|
| Q |
259 |
actgtcagaga |
269 |
Q |
| |
|
| ||||||||| |
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|
| T |
30131078 |
aatgtcagaga |
30131068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 269
Target Start/End: Complemental strand, 30120174 - 30120068
Alignment:
| Q |
163 |
agttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactg |
262 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | |
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| T |
30120174 |
agttgggttgttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaata |
30120075 |
T |
|
| Q |
263 |
tcagaga |
269 |
Q |
| |
|
||||||| |
|
|
| T |
30120074 |
tcagaga |
30120068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 400
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
367 |
tacacttaagatatgggtgatgcaagaatacaca |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 284
Target Start/End: Original strand, 21426470 - 21426703
Alignment:
| Q |
51 |
ctagttcaattgacttggagatgttctcattgaggggtaatcaatgggaacaaattgagtttgattctgatttgccttatgagaatactgcaagctctaa |
150 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||| | | || ||||| ||||||||||| ||| |||| ||||||||||| | ||||| || | | |
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|
| T |
21426470 |
ctagttcaattgacttgaagattttctcattgagagctcataaatggaaacaaattgaggttgcttctcatttgccttatatcattactgatgtctatga |
21426569 |
T |
|
| Q |
151 |
tggtggtcccagagttgggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaag |
250 |
Q |
| |
|
| | |||||||| ||||||||||| ||||| |||||||||||||| || || || | |||| | |||||||||||||||| ||||||||||| |
|
|
| T |
21426570 |
atttcggcccagagtcgggtcgttcttaaatggggctattcattggctggttcataattctgagaccaaccgggatgttattattgcccttgatttaaag |
21426669 |
T |
|
| Q |
251 |
gaaatgacactgtcagagactgctctcccagatg |
284 |
Q |
| |
|
|||| ||| ||||||||| ||||| ||||||| |
|
|
| T |
21426670 |
gaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 21430161 - 21430245
Alignment:
| Q |
46 |
ggtatctagttcaattgacttggagatgttctcattgaggggtaatcaatgggaacaaattgagtttgattctgatttgccttatg |
131 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| | |||||||| |||| |||||||| ||| |||| |||||||||||| |
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|
| T |
21430161 |
ggtatctagttcaattgacttagagattttctcattgagagctaatcaat-ggaaaaaattgaggttgcttctcatttgccttatg |
21430245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1051 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1051
Description:
Target: scaffold1051; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 2039 - 1971
Alignment:
| Q |
61 |
tgacttggagatgttctcattgaggggtaatcaatgggaacaaattgagtttgattctgatttgcctta |
129 |
Q |
| |
|
|||||||||||| ||||||||||| | |||| | ||| ||||||||||||||| |||| ||||||||| |
|
|
| T |
2039 |
tgacttggagattttctcattgagagctaataagtggaaacaaattgagtttggttctcctttgcctta |
1971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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