View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10481A_low_363 (Length: 251)
Name: NF10481A_low_363
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10481A_low_363 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4179049 - 4179286
Alignment:
| Q |
1 |
ggacttgctgacagagtcacagttgccaacatttgtaaaaattggtgacaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaaatgc |
100 |
Q |
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| T |
4179049 |
ggacttgcagacagagtcacagttgccaacatttgtaaaaattggtgacaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaaatgc |
4179148 |
T |
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| Q |
101 |
gccgtgctttgaaatgtcgaacttatagctttctgtatcaggctcctctctgcttctggaacctccgcattccgcaggagtggaaccttttgttcatcgt |
200 |
Q |
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| T |
4179149 |
gccgtgctttgaaatgtcgaacttatagctttctgtaccaggctcctctctgcttctggaacctccgcattccgcaggagtggaaccttttgttcatcgt |
4179248 |
T |
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| Q |
201 |
tcttagaatcatcatcgatttctaaattgatgtccatc |
238 |
Q |
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| T |
4179249 |
tcttagaatcatcatcgatttctaaattgatgtccatc |
4179286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 3 - 215
Target Start/End: Original strand, 4168124 - 4168339
Alignment:
| Q |
3 |
acttgctgacagagtcacagttgccaacatttgtaaaaattggtgacaaaagttggaaagccagaacagtgcctgtaggtagaaggtttgccaaatgcgc |
102 |
Q |
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| T |
4168124 |
acttgctgacagagtcacagctgccaatatttgtaaagattggtgataaaagttgtaatgcaaggacagtgcctgtaggtagaaggtttgctaaatgtgc |
4168223 |
T |
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| Q |
103 |
cgtgctttgaaatgtcgaacttatagctttctgtatcaggctcctctctgcttctggaacctccgcattccgcaggagtggaaccttttgttcatc---g |
199 |
Q |
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| T |
4168224 |
cgtgctctgaaatgtcaaacttatagctgtttgtatcaagtttctctttgcttctggaacctctgcatttagcagtagtggaaccttgtgttcatccttg |
4168323 |
T |
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| Q |
200 |
ttcttagaatcatcat |
215 |
Q |
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| T |
4168324 |
ttcttagaatcatcat |
4168339 |
T |
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