View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10481A_low_364 (Length: 251)

Name: NF10481A_low_364
Description: NF10481A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10481A_low_364
NF10481A_low_364
[»] chr6 (7 HSPs)
chr6 (1-233)||(7428453-7428685)
chr6 (1-233)||(16279048-16279280)
chr6 (1-233)||(28365611-28365843)
chr6 (17-200)||(26597582-26597764)
chr6 (26-111)||(1599690-1599776)
chr6 (65-125)||(27436851-27436911)
chr6 (13-106)||(24175021-24175115)
[»] chr1 (13 HSPs)
chr1 (1-233)||(40946405-40946637)
chr1 (1-233)||(20306701-20306933)
chr1 (1-233)||(1992308-1992540)
chr1 (1-233)||(30001710-30001942)
chr1 (58-158)||(8313415-8313515)
chr1 (23-111)||(43387089-43387178)
chr1 (58-214)||(16851869-16852023)
chr1 (16-109)||(47783156-47783250)
chr1 (77-120)||(22636363-22636406)
chr1 (81-111)||(3982730-3982760)
chr1 (34-111)||(26531814-26531892)
chr1 (15-107)||(16852896-16852989)
chr1 (70-111)||(19102764-19102805)
[»] chr7 (11 HSPs)
chr7 (1-233)||(43989568-43989800)
chr7 (51-158)||(38788960-38789067)
chr7 (77-177)||(4120049-4120149)
chr7 (77-120)||(45406696-45406739)
chr7 (22-107)||(6677121-6677207)
chr7 (81-135)||(17474783-17474837)
chr7 (81-135)||(17510267-17510321)
chr7 (81-135)||(17542893-17542947)
chr7 (81-135)||(17578377-17578431)
chr7 (55-92)||(22528932-22528969)
chr7 (55-111)||(2452121-2452177)
[»] chr3 (16 HSPs)
chr3 (1-233)||(20934965-20935197)
chr3 (1-233)||(32976439-32976671)
chr3 (1-233)||(42400351-42400563)
chr3 (1-199)||(17764041-17764239)
chr3 (1-199)||(19065361-19065559)
chr3 (16-200)||(10976449-10976634)
chr3 (19-107)||(50241485-50241574)
chr3 (26-111)||(50331951-50332037)
chr3 (23-109)||(14044290-14044377)
chr3 (32-111)||(14045390-14045470)
chr3 (70-111)||(2250976-2251017)
chr3 (77-124)||(12125608-12125655)
chr3 (78-119)||(431968-432009)
chr3 (70-111)||(20790313-20790354)
chr3 (58-118)||(9261465-9261525)
chr3 (81-125)||(11655434-11655478)
[»] chr2 (13 HSPs)
chr2 (1-233)||(19040583-19040815)
chr2 (1-233)||(39839056-39839288)
chr2 (23-120)||(3395442-3395540)
chr2 (24-120)||(5788862-5788959)
chr2 (15-117)||(36720068-36720171)
chr2 (1-95)||(19994396-19994490)
chr2 (15-108)||(29977342-29977436)
chr2 (58-124)||(36729301-36729367)
chr2 (70-109)||(14905103-14905142)
chr2 (78-124)||(2592997-2593043)
chr2 (15-107)||(14872727-14872820)
chr2 (58-118)||(14868824-14868884)
chr2 (89-125)||(19994496-19994532)
[»] scaffold1750 (1 HSPs)
scaffold1750 (1-233)||(252-484)
[»] scaffold1345 (1 HSPs)
scaffold1345 (1-233)||(1734-1964)
[»] chr4 (12 HSPs)
chr4 (23-120)||(13228691-13228789)
chr4 (58-158)||(28475659-28475759)
chr4 (19-111)||(6554542-6554635)
chr4 (55-125)||(11559503-11559573)
chr4 (58-124)||(50158183-50158249)
chr4 (58-118)||(24183450-24183510)
chr4 (19-111)||(314324-314417)
chr4 (16-110)||(8057676-8057770)
chr4 (13-106)||(42729453-42729545)
chr4 (53-122)||(11560207-11560276)
chr4 (15-107)||(24182482-24182575)
chr4 (79-111)||(281928-281960)
[»] scaffold0021 (1 HSPs)
scaffold0021 (16-170)||(129039-129191)
[»] chr5 (6 HSPs)
chr5 (23-120)||(38015922-38016020)
chr5 (19-111)||(9024953-9025046)
chr5 (75-126)||(24539577-24539628)
chr5 (77-122)||(9012759-9012804)
chr5 (70-111)||(23570629-23570670)
chr5 (70-111)||(30327042-30327083)
[»] scaffold2098 (1 HSPs)
scaffold2098 (1-170)||(221-390)
[»] scaffold0159 (1 HSPs)
scaffold0159 (24-120)||(33235-33332)
[»] scaffold0191 (1 HSPs)
scaffold0191 (58-158)||(5115-5215)
[»] chr8 (18 HSPs)
chr8 (26-109)||(42797278-42797362)
chr8 (26-107)||(13756548-13756630)
chr8 (19-111)||(41527022-41527115)
chr8 (53-105)||(17871244-17871296)
chr8 (75-111)||(38290542-38290578)
chr8 (58-120)||(10901468-10901530)
chr8 (26-111)||(23141788-23141874)
chr8 (70-111)||(361048-361089)
chr8 (1-42)||(14373959-14374000)
chr8 (15-107)||(15276802-15276895)
chr8 (15-107)||(15457171-15457264)
chr8 (81-122)||(23686609-23686650)
chr8 (78-122)||(5685877-5685921)
chr8 (76-120)||(8357690-8357734)
chr8 (58-118)||(15277767-15277827)
chr8 (58-118)||(15458136-15458196)
chr8 (76-120)||(25087451-25087495)
chr8 (70-102)||(45245323-45245355)
[»] scaffold0114 (1 HSPs)
scaffold0114 (19-111)||(37041-37134)
[»] scaffold0003 (1 HSPs)
scaffold0003 (65-125)||(50451-50511)
[»] scaffold0377 (1 HSPs)
scaffold0377 (31-122)||(12554-12648)
[»] scaffold0169 (1 HSPs)
scaffold0169 (78-119)||(2278-2319)
[»] scaffold0155 (1 HSPs)
scaffold0155 (83-123)||(22626-22666)


Alignment Details
Target: chr6 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 7428453 - 7428685
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7428453 ttcaaagtctgaaagcattatgtatgtgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacttgacaca 7428552  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7428553 ttaacatctctccattaagtgtcaggatctttgtgtttgtagtccaccaccaagaacaactctcgctccctcacaatgtctaacggagatgtgataccac 7428652  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
     |||| |||||||||||||||||||||||||||    
T  7428653 agctgagctttctgtggaagcttaaactgatgt 7428685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 16279048 - 16279280
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||||||| ||||||| || ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  16279048 ttcaaagtctgaaagcattatgcatgtgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaacttacacttgacaca 16279147  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16279148 ttaacatctgtccattaagtgtcaggatctttgtgtttgtagtccaccaccaagaacaactctcgctccctcacaatgtctaacggagatgtgataccac 16279247  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
      ||| |||||||||||||||||||||||||||    
T  16279248 aactgagctttctgtggaagcttaaactgatgt 16279280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 28365843 - 28365611
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||| ||| ||||||| || ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  28365843 ttcaaagtctaaaagcattatgcatgtgaatcatctcacttaaatgtttctcatatatactattgcatacaatataaaattttaacttacacttgacaca 28365744  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  28365743 ttaacatctgtccattaagtgtcaggatctttgtgtttgtagtccaccaccaagaacaactctcgctccctcacaatgtctaacggagatgtgataccac 28365644  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
     |||| |||||||||||||||||||||||||||    
T  28365643 agctgagctttctgtggaagcttaaactgatgt 28365611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 26597582 - 26597764
Alignment:
Q  17 attatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcatt 116  Q
    ||||||||||||||| |||||| ||| |||||  | | || |||| |||| |||||| || ||||||| ||||||||||||| |||||||||||| ||||    
T  26597582 attatgtatatgagtaatctcatttatatgttc-tgacatatacttttgcttacaatgtagaattttagctcacacttgacatattaacatctctccatt 26597680  T
Q  117 aagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||||||   ||| |||  | || |||||||||| |||  |||||||  ||||| |  |||| ||||||||||||||    
T  26597681 aagtgtcaggatctccatgtccgtcattcatcaccaagaaccacttccgctcccctacaatattgaaccaagatgtgataccac 26597764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 1599776 - 1599690
Alignment:
Q  26 atgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||||||||||| |||||| |||  || ||||||||||| |||| |   |||||||||||||||||||||||||||||||||    
T  1599776 atgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctct 1599690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Original strand, 27436851 - 27436911
Alignment:
Q  65 gcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgtcag 125  Q
    |||| ||||||| || |||||||| ||||||||||||| |||||||| |||||||| ||||    
T  27436851 gcatccaatatagaactttaactcgcacttgacacattgacatctctacattaagtttcag 27436911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 106
Target Start/End: Complemental strand, 24175115 - 24175021
Alignment:
Q  13 aaacattatgtatatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaaca 106  Q
    |||||||| ||||| | ||||||||||||| |||||  |||  || || ||||||||||| ||   |||||||| ||||||||||||||||||||    
T  24175115 aaacattaggtataagggtcatctcacttatatgttgctcaacatatattattgcatacattactgaattttaattcacacttgacacattaaca 24175021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 40946637 - 40946405
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40946637 ttcaaagtctgaaagcattatgtatgtgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacttgacaca 40946538  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  40946537 ttaacatctctccattaagtgtcaggatctttgtgtttgtagtccaccaccaagaacaactctcgctccctcacaatgtctaacggagatgtgataccac 40946438  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
     |||| |||||||||||||||||||||||||||    
T  40946437 agctgagctttctgtggaagcttaaactgatgt 40946405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 20306701 - 20306933
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20306701 ttcaaagtctgaaagcattatgtatatgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacttgacaca 20306800  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||||| |||||||    
T  20306801 ttaacatctctccattaagtgtcaggatctttgtgtttgtagtccaccacccaaaacaaccctcgctccctcacaatgtctaaccgagatgtaataccac 20306900  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
    |||||| |||||||||||| |||||||||||||    
T  20306901 cgctggactttctgtggaatcttaaactgatgt 20306933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1992540 - 1992308
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||    
T  1992540 ttcaaagtctgaaagtattatgtatgtgagtcatctcacttaaatgtttctcataactactattgcatacaatataaaattttaactcacacttgacaca 1992441  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  1992440 ttaacatctctccattaagtgtcaggatctttgtgtttttagtccaccaccaagaacaactctcgctccctcacaatgtctaacggagatgtgataccac 1992341  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
     |||| |||||||||||||||||||||||||||    
T  1992340 agctgagctttctgtggaagcttaaactgatgt 1992308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 30001710 - 30001942
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    ||||||||| ||||  ||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  30001710 ttcaaagtccgaaagtattatgtatgtgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaacttacacttgacaca 30001809  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30001810 ttaacatctctccattaagtgtcaggatctttgtgtttgtagtccaccaccaagaacaactctcgctccctcacaatgtctaacggagatgtgataccac 30001909  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
     || | |||||||||||||||||||||||||||    
T  30001910 agccgagctttctgtggaagcttaaactgatgt 30001942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 8313415 - 8313515
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaac 157  Q
    |||| ||||||||||| |||||||||||||  ||||| | |||||||||||||| |||||||||||||  |||  ||||||||  ||||||||| |||||    
T  8313415 tactcttgcatacaatgtaaaattttaactttcacttaatacattaacatctctccattaagtgtcagactctccgtgttcgtgatccaccacctagaac 8313514  T
Q  158 a 158  Q
    |    
T  8313515 a 8313515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 43387089 - 43387178
Alignment:
Q  23 tatatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    |||| ||||||| ||||||| |||||| |||  || ||||||||||| |||| |  ||||||||||||||||||||||||||||||||||    
T  43387089 tatacgagtcatttcacttatatgtttctcaacatctactattgcattcaatgtgtaattttaactcacacttgacacattaacatctct 43387178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 214
Target Start/End: Complemental strand, 16852023 - 16851869
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaac 157  Q
    |||| ||||||||||| | ||||||||||| |||||  |||||||||||||||| ||||||  |||||  |||| ||||||||  ||||||||| | |||    
T  16852023 tactcttgcatacaatgtgaaattttaacttacactgaacacattaacatctctccattaa-agtcagactcttcgtgttcgtgatccaccacctaaaac 16851925  T
Q  158 aactctcgctccctcacaatgtctaaccgagatgtgataccaccgctgggctttctg 214  Q
     |||| ||||||| || || ||  |||| | || | ||||||||| |||||||||||    
T  16851924 -actcccgctcccccaaaacgttgaaccaaaatatcataccaccgttgggctttctg 16851869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 109
Target Start/End: Complemental strand, 47783250 - 47783156
Alignment:
Q  16 cattatgtatatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatct 109  Q
    ||||||||||||||||||| ||||||| |||||  | |  | ||||| |||||  |||| | ||| |||||||||||||||||||||||||||||    
T  47783250 cattatgtatatgagtcatatcacttatatgttgttaaacaattactcttgcagccaatgtgaaactttaactcacacttgacacattaacatct 47783156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Original strand, 22636363 - 22636406
Alignment:
Q  77 aaattttaactcacacttgacacattaacatctctgcattaagt 120  Q
    |||||||||||||||||||| | |||||||||||| ||||||||    
T  22636363 aaattttaactcacacttgaaaaattaacatctctccattaagt 22636406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 111
Target Start/End: Complemental strand, 3982760 - 3982730
Alignment:
Q  81 tttaactcacacttgacacattaacatctct 111  Q
    |||||||||||||||||||||||||||||||    
T  3982760 tttaactcacacttgacacattaacatctct 3982730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 26531814 - 26531892
Alignment:
Q  34 tctcacttaaatgtttatca-tatttactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||| |||||||||| |||||||| || ||| |||| || || || |||||||| |||||| ||||||||||||    
T  26531814 tctcacttacatgtttatcaatatttactcttacattcaatgtagaacttcaactcacatttgacaaattaacatctct 26531892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 16852989 - 16852896
Alignment:
Q  15 acattatgtatatgagtcatctcacttaaatgtttatc-atatttactattgcatacaatataaaattttaactcacacttgacacattaacat 107  Q
    ||||||||||||| ||||||||||| |  |||||| || |||| |||| |||| | |||| || || ||||||| |||| ||||||||||||||    
T  16852989 acattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatgtagaagtttaacttacacatgacacattaacat 16852896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 19102764 - 19102805
Alignment:
Q  70 caatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  19102764 caatataaatttttaactcatacttgacacattaacacctct 19102805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 43989800 - 43989568
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||||||  |||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  43989800 ttcaaagtctgaaggcattatgtatatgaatcatctcacttaaatgtttctcacatctactattgcatacaatataaaattttaactcacacttgacaca 43989701  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43989700 ttaacatctctcaattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 43989601  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
    ||||  |||||||||||||||||||||||||||    
T  43989600 cgctaagctttctgtggaagcttaaactgatgt 43989568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 38788960 - 38789067
Alignment:
Q  51 tcatatttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccac 150  Q
    |||||| |||| ||||||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||||  |||  ||||| ||  ||||||||    
T  38788960 tcatatctactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactctccgtgtttgtgatccaccac 38789059  T
Q  151 caagaaca 158  Q
    | ||||||    
T  38789060 ctagaaca 38789067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 177
Target Start/End: Original strand, 4120049 - 4120149
Alignment:
Q  77 aaattttaactcacacttgacacattaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaa 176  Q
    ||||||||||| ||||||||||| |||  |||||| |||||||||| ||  | |||| ||| || ||| ||||| |||||| ||||| |||||| |||||    
T  4120049 aaattttaactaacacttgacacgttagtatctctccattaagtgtgagagtgtttgcgtttgtggtctaccactaagaaccactcttgctcccccacaa 4120148  T
Q  177 t 177  Q
    |    
T  4120149 t 4120149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 45406739 - 45406696
Alignment:
Q  77 aaattttaactcacacttgacacattaacatctctgcattaagt 120  Q
    ||||||||||||||| ||||||||||||||| ||| ||||||||    
T  45406739 aaattttaactcacaattgacacattaacatttctccattaagt 45406696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 6677121 - 6677207
Alignment:
Q  22 gtatatgagtcatctcacttaaatgtttatcata-tttactattgcatacaatataaaattttaactcacacttgacacattaacat 107  Q
    |||||||||||||||||| || |||||  ||| | |||||  || ||| ||||||| ||||||||||||||||| ||| ||||||||    
T  6677121 gtatatgagtcatctcacatatatgttgttcaaaatttaccttttcattcaatatagaattttaactcacacttaacaaattaacat 6677207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 17474783 - 17474837
Alignment:
Q  81 tttaactcacacttgacacattaacatctctgcattaagtgtcaggatctttgtg 135  Q
    ||||||||| | ||||||||||||||||||| || ||||||||||  ||||||||    
T  17474783 tttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 17474837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Original strand, 17510267 - 17510321
Alignment:
Q  81 tttaactcacacttgacacattaacatctctgcattaagtgtcaggatctttgtg 135  Q
    ||||||||| | ||||||||||||||||||| || ||||||||||  ||||||||    
T  17510267 tttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 17510321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 17542947 - 17542893
Alignment:
Q  81 tttaactcacacttgacacattaacatctctgcattaagtgtcaggatctttgtg 135  Q
    ||||||||| | ||||||||||||||||||| || ||||||||||  ||||||||    
T  17542947 tttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 17542893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 135
Target Start/End: Complemental strand, 17578431 - 17578377
Alignment:
Q  81 tttaactcacacttgacacattaacatctctgcattaagtgtcaggatctttgtg 135  Q
    ||||||||| | ||||||||||||||||||| || ||||||||||  ||||||||    
T  17578431 tttaactcaaatttgacacattaacatctctccagtaagtgtcagactctttgtg 17578377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 22528969 - 22528932
Alignment:
Q  55 atttactattgcatacaatataaaattttaactcacac 92  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  22528969 atttactcttgcatacaatgtaaaattttaactcacac 22528932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 2452177 - 2452121
Alignment:
Q  55 atttactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||| |||||| |||| | ||| |||||||||||||||| ||||||| ||||||    
T  2452177 atttacttttgcattcaatgtgaaactttaactcacacttgaaacattaaaatctct 2452121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 20934965 - 20935197
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||    
T  20934965 ttcaaagtccgaaagcattatgtatatgagtcatctcacttaaatgtttctcacatctactattgcatacaatataaaattttaactcacacctgacaca 20935064  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20935065 ttaacatctctccattaagtgtcaggatctttgtgttcgttgtccaccaccaagaacaactctcgctccctcacaatgtctaactgagatgtgataccac 20935164  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
    ||||||||||||||||||||||| |||||||||    
T  20935165 cgctgggctttctgtggaagcttgaactgatgt 20935197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 32976439 - 32976671
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  32976439 ttcaaagtctgaaagcattatgtatatgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacttgataca 32976538  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||||||||| | |||||| ||||||||||||||||||||||||||||| | |||||||    
T  32976539 ttaacatctctccattaagtgttaggatctttgtgtttgtagtccaccacccaaaacaaccctcgctccctcacaatgtctaaccgagatataataccac 32976638  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
    |||||| |||| ||||||| |||||||||||||    
T  32976639 cgctggactttatgtggaatcttaaactgatgt 32976671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 42400351 - 42400563
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  42400351 ttcaaagtctgaaagcattatgtatgtgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacgtgacaca 42400450  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| ||||||||||||||||||||||||||                    ||||||||||||||| |||||||||| |||||||||||||||    
T  42400451 ttaacatctctccattaagtgtcaggatctttgtgttc--------------------actctcgctccctcaaaatgtctaacggagatgtgataccac 42400530  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
     |||| ||||||||||||| |||||||||||||    
T  42400531 agctgagctttctgtggaaacttaaactgatgt 42400563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 17764239 - 17764041
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||| ||| |||||||||||||||| |||||||||| |||||  ||| || |||| | || |||||| |  |||||||||||||||||| ||||    
T  17764239 ttcaaagtcttaaagcattatgtatatgagtaatctcacttatatgttgctcacatatactctggcttacaatgtggaattttaactcacacttgtcaca 17764140  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgatacca 199  Q
    ||||||||||| |||||||| |||||| ||  ||||||||  ||| | ||||||||| |||| || |||  |||||| |  ||||| ||||||||||||    
T  17764139 ttaacatctctccattaagtttcaggaactccgtgttcgtgatcccctaccaagaaccactcccgttcctccacaatattaaaccgggatgtgatacca 17764041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 19065559 - 19065361
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||| ||| |||||||||||||||| |||||||||| |||||  ||| || |||| | || |||||| |  |||||||||||||||||| ||||    
T  19065559 ttcaaagtcttaaagcattatgtatatgagtaatctcacttatatgttgctcacatatactctggcttacaatgtggaattttaactcacacttgtcaca 19065460  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgatacca 199  Q
    ||||||||||| |||||||| |||||| ||  ||||||||  ||| | ||||||||| |||| || |||  |||||| |  ||||| ||||||||||||    
T  19065459 ttaacatctctccattaagtttcaggaactccgtgttcgtgatcccctaccaagaaccactcccgttcctccacaatattaaaccgggatgtgatacca 19065361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 10976449 - 10976634
Alignment:
Q  16 cattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcat 115  Q
    |||||||||||||||| ||||   ||| |||||  ||| ||||||| || | ||||||||  ||||| ||||||||||| |||| ||||||| ||| |||    
T  10976449 cattatgtatatgagtaatctattttatatgttgctcacatttactctttcttacaatatggaatttaaactcacactttacactttaacatttctccat 10976548  T
Q  116 taagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgct-ccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||| |||||| |||| |||  |||||| |||||||| |||  |||| ||| |||||| |  ||||| |||||||||||||    
T  10976549 taagtgtcatgatcttcgtgtccgtgatccacctccaagaaccacttccgctccccccacaatattgaaccgggatgtgataccac 10976634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 50241574 - 50241485
Alignment:
Q  19 tatgtatatgagtcatctcacttaaatgtttatcata-tttactattgcatacaatataaaattttaactcacacttgacacattaacat 107  Q
    |||||||||||||||||||||||| |||||  ||||| |||||| ||  || || |||| ||||||||||||||||||||||||||||||    
T  50241574 tatgtatatgagtcatctcacttatatgttattcataatttactcttatatccactatagaattttaactcacacttgacacattaacat 50241485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 50331951 - 50332037
Alignment:
Q  26 atgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||||||||||| |||||| |||  || ||||||||||| |||| |   |||||||||||||||||||||||||||||||||    
T  50331951 atgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctct 50332037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 109
Target Start/End: Complemental strand, 14044377 - 14044290
Alignment:
Q  23 tatatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatct 109  Q
    |||||| ||||| |||||||||||||  |||  |||||||||||||| ||||||  || ||||| |||||||||||||||||||||||    
T  14044377 tatatgggtcatatcacttaaatgttgttcaacatttactattgcatccaatatggaactttaaatcacacttgacacattaacatct 14044290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 14045470 - 14045390
Alignment:
Q  32 catctcacttaaatgtttatcatattt-actattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||||| |||||  ||| |||| || ||| ||| |||||||||||||||||||||||| |||||||||||| ||||    
T  14045470 catctcacttatatgttgttcaaattttaccattccatccaatataaaattttaactcacactcgacacattaacacctct 14045390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 2251017 - 2250976
Alignment:
Q  70 caatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  2251017 caatataaatttttaactcatacttgacacattaacatctct 2250976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 12125608 - 12125655
Alignment:
Q  77 aaattttaactcacacttgacacattaacatctctgcattaagtgtca 124  Q
    |||||||||||| || ||||||||||| ||||||||||||| ||||||    
T  12125608 aaattttaactcgcatttgacacattatcatctctgcattaggtgtca 12125655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 432009 - 431968
Alignment:
Q  78 aattttaactcacacttgacacattaacatctctgcattaag 119  Q
    |||||||||||||| |||||||||||| |||||| |||||||    
T  432009 aattttaactcacaattgacacattaatatctctccattaag 431968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 20790354 - 20790313
Alignment:
Q  70 caatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  20790354 caatataaatttttaactcatacttgacacattaacacctct 20790313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 9261525 - 9261465
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaa 118  Q
    |||| ||||||||||| | ||||||||| | |||||  |||||||||||||||| ||||||    
T  9261525 tactcttgcatacaatgtgaaattttaagttacactgaacacattaacatctctccattaa 9261465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 11655434 - 11655478
Alignment:
Q  81 tttaactcacacttgacacattaacatctctgcattaagtgtcag 125  Q
    ||||||||||| |||| || ||||||||||| |||||||||||||    
T  11655434 tttaactcacatttgatacgttaacatctctccattaagtgtcag 11655478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 19040815 - 19040583
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  19040815 ttcaaagtctgaaagcattatgtatgtgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacttgacaca 19040716  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  19040715 ttaacatctctccattaagtgtcaggatctttgtgtttgtagtccaccaccaacaacaactctcgctccctcacaatgtctaacggagatgtgataccac 19040616  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
     |||| |||||||||||||||||||||||||||    
T  19040615 agctgagctttctgtggaagcttaaactgatgt 19040583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 39839056 - 39839288
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39839056 ttcaaagtctgaaagcattatgtatgtgagtcatctcacttaaatgtttctcatatctactattgcatacaatataaaattttaactcacacttgacaca 39839155  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  39839156 ttaacatctctccgttaagtgtcaggatctttgtgtttgtagtccaccaccaagaacaactctcgctctctcacaatgtctaacggagatgtgataccac 39839255  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
      ||| |||||||||||||||||||||||||||    
T  39839256 aactgagctttctgtggaagcttaaactgatgt 39839288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 3395442 - 3395540
Alignment:
Q  23 tatatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagt 120  Q
    |||||||||||||||||||| |||||| |||  || ||||||||||| |||  |   |||||||||||||| |||||||||||||||||| ||||||||    
T  3395442 tatatgagtcatctcacttatatgtttctcaacatctactattgcattcaaagtgttattttaactcacacctgacacattaacatctctccattaagt 3395540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 5788862 - 5788959
Alignment:
Q  24 atatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagt 120  Q
    ||||||||||||||||||| |||||  |||  || ||||||||||| |||| |   ||||||||||||| ||||||||||||||||||| ||||||||    
T  5788862 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagt 5788959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 36720171 - 36720068
Alignment:
Q  15 acattatgtatatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgc 113  Q
    |||||| |||||||  |||||||||||| |||||  |||  || || ||||||| ||| | || |||||||||||||||||||||||||||||||||| |    
T  36720171 acattaggtatatggatcatctcacttatatgttgctcaacatatattattgcacacattgtagaattttaactcacacttgacacattaacatctcttc 36720072  T
Q  114 atta 117  Q
    ||||    
T  36720071 atta 36720068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 19994396 - 19994490
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttg 95  Q
    |||||||||| ||  |||| | |||| ||||||||||||||| || ||  ||| || |||| ||||||||||| | |||||||||||||||||||    
T  19994396 ttcaaagtcttaaggcattgtatatacgagtcatctcacttatatattgctcacatctactcttgcatacaatttgaaattttaactcacacttg 19994490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 15 - 108
Target Start/End: Original strand, 29977342 - 29977436
Alignment:
Q  15 acattatgtatatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatc 108  Q
    |||||| ||||||||||||| ||||||| ||||||||||  ||  ||| |||||| |||| |  || ||||||| ||||||||||||||||||||    
T  29977342 acattaggtatatgagtcatatcacttatatgtttatcaacatccactcttgcattcaatgtggaactttaacttacacttgacacattaacatc 29977436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 36729301 - 36729367
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgtca 124  Q
    |||| ||||||||||| | ||||||| |||||||||||||| |||||||| ||| ||| ||||||||    
T  36729301 tactcttgcatacaatgtgaaatttttactcacacttgacaaattaacatatctccataaagtgtca 36729367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 14905142 - 14905103
Alignment:
Q  70 caatataaaattttaactcacacttgacacattaacatct 109  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  14905142 caatataaaactttaactcacacttgacacatcaacatct 14905103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 124
Target Start/End: Original strand, 2592997 - 2593043
Alignment:
Q  78 aattttaactcacacttgacacattaacatctctgcattaagtgtca 124  Q
    |||||| |||||||||||||| |||||||||| | ||||||||||||    
T  2592997 aatttttactcacacttgacaaattaacatctatccattaagtgtca 2593043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 14872820 - 14872727
Alignment:
Q  15 acattatgtatatgagtcatctcacttaaatgtttatc-atatttactattgcatacaatataaaattttaactcacacttgacacattaacat 107  Q
    ||||||||||||| ||||||||||| |  |||||| || |||| |||| |||| | |||| || || ||||||| |||| ||||||||||||||    
T  14872820 acattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatgtagaagtttaacttacacatgacacattaacat 14872727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Complemental strand, 14868884 - 14868824
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaa 118  Q
    |||| |||| |||||| | ||||||||||| |||||  |||||||||||||||| ||||||    
T  14868884 tactcttgcttacaatgtgaaattttaacttacactgaacacattaacatctctccattaa 14868824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 125
Target Start/End: Original strand, 19994496 - 19994532
Alignment:
Q  89 acacttgacacattaacatctctgcattaagtgtcag 125  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  19994496 acacttgacacattagcatctctccattaagtgtcag 19994532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 252 - 484
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    ||||||||||||||  |||||||||| |||||||||| ||||||||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||    
T  252 ttcaaagtctgaaagtattatgtatacgagtcatctcgcttaaatgtttctcacatctactattgcatacaatataaaattttaactcacacttgccaca 351  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  352 ttaacatctctccattaagtgtcaagatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 451  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
    ||||| ||||||||| |||||||||||||||||    
T  452 cgctgagctttctgttgaagcttaaactgatgt 484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1345 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold1345
Description:

Target: scaffold1345; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 1964 - 1734
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||||||| ||||||||||  |||| ||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||    
T  1964 ttcaaagtctgaaagcattatgtat--gagttatctcacttaaatgtttctcacatctactattgcatacaatataaaattttaactcacacttgacaca 1867  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccctcacaatgtctaaccgagatgtgataccac 200  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1866 ttaacatctctcaattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactttcgctccctcacaatgtctaaccgagatgtgataccac 1767  T
Q  201 cgctgggctttctgtggaagcttaaactgatgt 233  Q
    ||||  |||||||||||||||||||||||||||    
T  1766 cgctttgctttctgtggaagcttaaactgatgt 1734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 120
Target Start/End: Complemental strand, 13228789 - 13228691
Alignment:
Q  23 tatatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagt 120  Q
    |||||||||||||||||||| |||||| |||  || ||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||||||||    
T  13228789 tatatgagtcatctcacttatatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctccattaagt 13228691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 28475659 - 28475759
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaac 157  Q
    |||| ||||||||||| | ||||||||||| |||||| |||||||||||||||| |||||||||||||  |||  ||||||||  ||||||||| |||||    
T  28475659 tactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaagtgtcagactctccgtgttcgtgatccaccacctagaac 28475758  T
Q  158 a 158  Q
    |    
T  28475759 a 28475759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 6554635 - 6554542
Alignment:
Q  19 tatgtatatgagtcatctcacttaaatgtttatcatatt-tactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    |||||||||||||||||||||||| |||||  ||| | | |||| || ||| || |||| ||||||||||||||||||||||||||||||||||    
T  6554635 tatgtatatgagtcatctcacttatatgttattcaaaatctactcttccatccactatagaattttaactcacacttgacacattaacatctct 6554542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 11559573 - 11559503
Alignment:
Q  55 atttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgtcag 125  Q
    ||||||| ||||||||||||| ||||||||| |||||||| ||| |||||||||||| || ||||||||||    
T  11559573 atttactcttgcatacaatatcaaattttaagtcacactttacatattaacatctcttcaataagtgtcag 11559503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 124
Target Start/End: Complemental strand, 50158249 - 50158183
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgtca 124  Q
    |||| ||||||| ||| | ||| ||||||||| ||||||||||||||||||||| ||||||||||||    
T  50158249 tactcttgcataaaatgtgaaactttaactcatacttgacacattaacatctctccattaagtgtca 50158183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 24183450 - 24183510
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaa 118  Q
    |||| ||||||||||| | ||||||||||| |||||| |||||||||||||||| ||||||    
T  24183450 tactcttgcatacaatgtgaaattttaacttacacttaacacattaacatctctccattaa 24183510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 314417 - 314324
Alignment:
Q  19 tatgtatatgagtcatctcacttaaatgtttatcatatt-tactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    |||||||||||||||||||||||| |||||  ||| | | |||| ||  || ||  ||| ||||||||||||| ||||||||||||||||||||    
T  314417 tatgtatatgagtcatctcacttatatgttattcaaaatctactcttctatccaccatagaattttaactcacgcttgacacattaacatctct 314324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 8057676 - 8057770
Alignment:
Q  16 cattatgtatatgagtcatctcacttaaatgtttatcata-tttactattgcatacaatataaaattttaactcacacttgacacattaacatctc 110  Q
    ||||| |||||||| |||| ||||||| ||| |||||| | |||||| |||||| ||||||| || ||||||||| | |||||| |||||||||||    
T  8057676 cattaggtatatga-tcatatcacttatatgcttatcaaaatttactcttgcatccaatatagaactttaactcatagttgacaaattaacatctc 8057770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 42729453 - 42729545
Alignment:
Q  13 aaacattatgtatatgagtcatctcacttaaatgtttatc-atatttactattgcatacaatataaaattttaactcacacttgacacattaaca 106  Q
    ||||| || ||||||||||||||||||||| |||||| || | || |||||||||||||| | |  ||||||||||  |||||||||| ||||||    
T  42729453 aaacagtaggtatatgagtcatctcacttatatgtttctcaacatgtactattgcatacattgttgaattttaact--cacttgacacgttaaca 42729545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Complemental strand, 11560276 - 11560207
Alignment:
Q  53 atatttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgt 122  Q
    |||| |||| |||||| |||| || || |||||||||| | |||||||||||||||||| | ||||||||    
T  11560276 atatatactcttgcatccaatgtataagtttaactcacccatgacacattaacatctctcccttaagtgt 11560207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 24182482 - 24182575
Alignment:
Q  15 acattatgtatatgagtcatctcacttaaatgtttatc-atatttactattgcatacaatataaaattttaactcacacttgacacattaacat 107  Q
    ||||||||||||| ||||||||||| |  |||||| || |||| |||| |||| | |||| || || ||||||| |||| ||||||||||||||    
T  24182482 acattatgtatattagtcatctcacattcatgtttctcaatatatacttttgctttcaatgtagaagtttaacttacacatgacacattaacat 24182575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 111
Target Start/End: Complemental strand, 281960 - 281928
Alignment:
Q  79 attttaactcacacttgacacattaacatctct 111  Q
    |||||||| ||||||||||||||||||||||||    
T  281960 attttaacccacacttgacacattaacatctct 281928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 170
Target Start/End: Original strand, 129039 - 129191
Alignment:
Q  16 cattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcat 115  Q
    |||||||||||||||| ||||   ||| |||||  ||| ||||||| |  | ||||||||  ||||| ||||||||||| |||| ||||||| ||| |||    
T  129039 cattatgtatatgagtaatctattttatatgttgctcacatttacttt--cttacaatatggaatttaaactcacactttacactttaacatttctccat 129136  T
Q  116 taagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccc 170  Q
    ||||||||| |||||| |||| |||  ||||||||||||||| |||| |||||||    
T  129137 taagtgtcatgatcttcgtgtccgtgatccaccaccaagaaccactcccgctccc 129191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 38015922 - 38016020
Alignment:
Q  23 tatatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagt 120  Q
    |||||||||||||||||||| |||||  |||  || ||||||||||| |||| |   ||||||||||||||||||||||||||||||||| ||| ||||    
T  38015922 tatatgagtcatctcacttatatgttgctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacatctctccatcaagt 38016020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 9025046 - 9024953
Alignment:
Q  19 tatgtatatgagtcatctcacttaaatgtttatcatatt-tactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    |||||||||||||||||||||||| |||||  ||| | | |||| ||  || || |||| ||||||||||||||||||||||||||||||||||    
T  9025046 tatgtatatgagtcatctcacttatatgttattcaaaatctactcttctatccactatataattttaactcacacttgacacattaacatctct 9024953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 126
Target Start/End: Complemental strand, 24539628 - 24539577
Alignment:
Q  75 taaaattttaactcacacttgacacattaacatctctgcattaagtgtcagg 126  Q
    ||||||||  |||||||||||| |||||||||| ||| ||||||||||||||    
T  24539628 taaaatttggactcacacttgatacattaacatatctccattaagtgtcagg 24539577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 9012759 - 9012804
Alignment:
Q  77 aaattttaactcacacttgacacattaacatctctgcattaagtgt 122  Q
    ||||||||||| |||||||||||||||| || ||| ||||||||||    
T  9012759 aaattttaactaacacttgacacattaatatgtctccattaagtgt 9012804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 23570629 - 23570670
Alignment:
Q  70 caatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  23570629 caatataaatttttaactcatacttgacacattaacacctct 23570670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 30327042 - 30327083
Alignment:
Q  70 caatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  30327042 caatataaatttttaactcatacttgacacattaacacctct 30327083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2098 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold2098
Description:

Target: scaffold2098; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 390 - 221
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcacttaaatgtttatcatatttactattgcatacaatataaaattttaactcacacttgacaca 100  Q
    |||||||||| ||  ||||||||| |||||| |||||  ||| |||||  ||| || |||| |||| ||||||||  ||||| |||||| |||| |||||    
T  390 ttcaaagtcttaaggcattatgtacatgagtaatctcttttatatgttgctcacatctactcttgcttacaatatggaatttaaactcaaactttacaca 291  T
Q  101 ttaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaacaactctcgctccc 170  Q
    |||||||| || ||||| ||||||  |||||  ||| |||  ||||||||||||||  |||| |||||||    
T  290 ttaacatccctccattatgtgtcaaaatcttcatgtccgtgatccaccaccaagaagcactcccgctccc 221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 33235 - 33332
Alignment:
Q  24 atatgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagt 120  Q
    ||||||||||||||||||| |||||  |||  || ||||||||||| |||| |   ||||||||||||| ||||||||||||||||||| ||||||||    
T  33235 atatgagtcatctcacttatatgttgttcaacatctactattgcattcaatgtgttattttaactcacatttgacacattaacatctcttcattaagt 33332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 5215 - 5115
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgtcaggatctttgtgttcgtagtccaccaccaagaac 157  Q
    |||| ||||||||||| | ||||||||||| |||||| | |||||||||||||| |||||||||||||  |||  ||||||||   |||||||| |||||    
T  5215 tactcttgcatacaatgtgaaattttaacttacacttaaaacattaacatctctccattaagtgtcagactctccgtgttcgtgacccaccacctagaac 5116  T
Q  158 a 158  Q
    |    
T  5115 a 5115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 109
Target Start/End: Original strand, 42797278 - 42797362
Alignment:
Q  26 atgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatct 109  Q
    ||||||||||||||||| |||||| |||  || ||||||||||| |||| |   |||||||||||||||||||||||||||||||    
T  42797278 atgagtcatctcacttatatgtttctcaacatatactattgcattcaatgtgttattttaactcacacttgacacattaacatct 42797362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 13756630 - 13756548
Alignment:
Q  26 atgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacat 107  Q
    ||||||||| |||||||||||||| |||  || ||||||||||| |||| |   |||||||||||||||||||||||||||||    
T  13756630 atgagtcatttcacttaaatgtttctcaacatctactattgcattcaatgtgttattttaactcacacttgacacattaacat 13756548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 41527022 - 41527115
Alignment:
Q  19 tatgtatatgagtcatctcacttaaatgtttatcatatt-tactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    |||||||||||||||||||||||| |||||  ||| | | |||| ||  || || |||| ||||||||||||||||||||||||||| ||||||    
T  41527022 tatgtatatgagtcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaatatctct 41527115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 17871296 - 17871244
Alignment:
Q  53 atatttactattgcatacaatataaaattttaactcacacttgacacattaac 105  Q
    ||||||||| || ||| |||| ||||| |||||||||||||||||||||||||    
T  17871296 atatttactcttacattcaatgtaaaactttaactcacacttgacacattaac 17871244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 38290578 - 38290542
Alignment:
Q  75 taaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||| |||||||||||||||||||||||||||||    
T  38290578 taaaattataactcacacttgacacattaacatctct 38290542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 10901468 - 10901530
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagt 120  Q
    ||||||||||| |||| |   ||||||||||||| |||| |||||||||||||| ||||||||    
T  10901468 tactattgcattcaatgtgttattttaactcacatttgatacattaacatctctccattaagt 10901530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 23141788 - 23141874
Alignment:
Q  26 atgagtcatctcacttaaatgtttatcat-atttactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||||||| ||| |||||| |||  || ||||||||||| |||| |   ||||||||||| ||||||||| |||||||||||    
T  23141788 atgagtcatctcatttatatgtttctcaacatctactattgcattcaatgtgttattttaactcatacttgacacgttaacatctct 23141874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 70 - 111
Target Start/End: Complemental strand, 361089 - 361048
Alignment:
Q  70 caatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||| |||||||||| |||||||||||||||| ||||    
T  361089 caatataaatttttaactcatacttgacacattaacacctct 361048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 14374000 - 14373959
Alignment:
Q  1 ttcaaagtctgaaaacattatgtatatgagtcatctcactta 42  Q
    |||||||||| ||||||||| ||||||| |||||||||||||    
T  14374000 ttcaaagtcttaaaacattaggtatatgggtcatctcactta 14373959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 15276802 - 15276895
Alignment:
Q  15 acattatgtatatgagtcatctcacttaaatgtttatc-atatttactattgcatacaatataaaattttaactcacacttgacacattaacat 107  Q
    ||||||||||||| ||||||||||| |  |||||| || |||| |||| |||| | |||| || || ||||||| |||| ||||||||||||||    
T  15276802 acattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatgtagaagtttaacttacacatgacacattaacat 15276895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 15457171 - 15457264
Alignment:
Q  15 acattatgtatatgagtcatctcacttaaatgtttatc-atatttactattgcatacaatataaaattttaactcacacttgacacattaacat 107  Q
    ||||||||||||| ||||||||||| |  |||||| || |||| |||| |||| | |||| || || ||||||| |||| ||||||||||||||    
T  15457171 acattatgtatattagtcatctcacattcatgtttctcaatatatacttttgcttccaatgtagaagtttaacttacacatgacacattaacat 15457264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 23686650 - 23686609
Alignment:
Q  81 tttaactcacacttgacacattaacatctctgcattaagtgt 122  Q
    |||||||||||||||||| |||||||||||| | ||||||||    
T  23686650 tttaactcacacttgacatattaacatctctcccttaagtgt 23686609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 122
Target Start/End: Complemental strand, 5685921 - 5685877
Alignment:
Q  78 aattttaactcacacttgacacattaacatctctgcattaagtgt 122  Q
    |||| |||||||||| |||||||||||||||||| | ||||||||    
T  5685921 aattataactcacacatgacacattaacatctctcctttaagtgt 5685877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 8357690 - 8357734
Alignment:
Q  76 aaaattttaactcacacttgacacattaacatctctgcattaagt 120  Q
    ||||||||||||||||||||||||||| |||| ||  ||||||||    
T  8357690 aaaattttaactcacacttgacacattgacatttcaacattaagt 8357734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 15277767 - 15277827
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaa 118  Q
    |||| |||| |||||| | ||||||||||| |||||  |||||||||||||||| ||||||    
T  15277767 tactcttgcttacaatgtgaaattttaacttacactaaacacattaacatctctccattaa 15277827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 15458136 - 15458196
Alignment:
Q  58 tactattgcatacaatataaaattttaactcacacttgacacattaacatctctgcattaa 118  Q
    |||| |||| |||||| | ||||||||||| |||||  |||||||||||||||| ||||||    
T  15458136 tactcttgcttacaatgtgaaattttaacttacactaaacacattaacatctctccattaa 15458196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 120
Target Start/End: Original strand, 25087451 - 25087495
Alignment:
Q  76 aaaattttaactcacacttgacacattaacatctctgcattaagt 120  Q
    ||||||||||||||||||||||||||| |||| ||  ||||||||    
T  25087451 aaaattttaactcacacttgacacattgacatttcaacattaagt 25087495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 45245355 - 45245323
Alignment:
Q  70 caatataaaattttaactcacacttgacacatt 102  Q
    ||||||||| |||||||||||||||||||||||    
T  45245355 caatataaatttttaactcacacttgacacatt 45245323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 37134 - 37041
Alignment:
Q  19 tatgtatatgagtcatctcacttaaatgtttatcatatt-tactattgcatacaatataaaattttaactcacacttgacacattaacatctct 111  Q
    ||||||||||| |||||||||||| |||||  ||| | | |||| ||  || || |||| ||||||||||||||||||||||||||||||||||    
T  37134 tatgtatatgaatcatctcacttatatgttattcaaaatctactcttctatccactatagaattttaactcacacttgacacattaacatctct 37041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 50511 - 50451
Alignment:
Q  65 gcatacaatataaaattttaactcacacttgacacattaacatctctgcattaagtgtcag 125  Q
    |||| ||||||| || |||||||| ||||||||||||| |||||||| |||||||| ||||    
T  50511 gcatccaatatagaactttaactcgcacttgacacattgacatctctacattaagtttcag 50451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 122
Target Start/End: Original strand, 12554 - 12648
Alignment:
Q  31 tcatctcacttaaatgtttatca-tatttactattgcatacaat--ataaaattttaactcacacttgacacattaacatctctgcattaagtgt 122  Q
    |||||||||||| |||||  ||| |||||||| ||||||  |||  ||| || |||||||||||| |||||||||||||||||| | ||||||||    
T  12554 tcatctcacttacatgttgctcaatatttactcttgcatctaatgtatagaaatttaactcacacatgacacattaacatctcttccttaagtgt 12648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 119
Target Start/End: Complemental strand, 2319 - 2278
Alignment:
Q  78 aattttaactcacacttgacacattaacatctctgcattaag 119  Q
    |||||||||| ||||||||||||||||||| ||| |||||||    
T  2319 aattttaacttacacttgacacattaacatatcttcattaag 2278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 123
Target Start/End: Original strand, 22626 - 22666
Alignment:
Q  83 taactcacacttgacacattaacatctctgcattaagtgtc 123  Q
    |||||||||||||||||||||| || | |||||||||||||    
T  22626 taactcacacttgacacattaagatttttgcattaagtgtc 22666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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